Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g079190.2.1 | Tomato | cytosol | 95.59 | 95.91 |
| VIT_00s0181g00040.t01 | Wine grape | nucleus | 77.08 | 77.87 |
| KRH49941 | Soybean | cytosol | 71.48 | 72.84 |
| KRH41935 | Soybean | cytosol | 71.14 | 72.37 |
| VIT_05s0020g00220.t01 | Wine grape | cytosol | 26.83 | 66.39 |
| VIT_05s0020g04830.t01 | Wine grape | cytosol | 25.64 | 63.45 |
| PGSC0003DMT400029517 | Potato | cytosol | 54.16 | 54.91 |
| PGSC0003DMT400093216 | Potato | mitochondrion | 13.92 | 53.59 |
| PGSC0003DMT400061752 | Potato | plastid | 52.63 | 53.45 |
| PGSC0003DMT400053430 | Potato | cytosol | 24.11 | 52.79 |
| PGSC0003DMT400056570 | Potato | cytosol | 52.8 | 52.36 |
| PGSC0003DMT400008765 | Potato | cytosol | 8.83 | 48.6 |
| PGSC0003DMT400013682 | Potato | cytosol, mitochondrion | 11.38 | 47.86 |
| PGSC0003DMT400005419 | Potato | cytosol | 48.39 | 46.49 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102595865 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | UniProt:M1C1I2 | PFAM:PF12937 | EnsemblPlantsGene:PGSC0003DMG400022404 | PGSC:PGSC0003DMG400022404 |
| EnsemblPlants:PGSC0003DMT400057711 | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF1 | SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI00029613B5 | RefSeq:XP_006347140.1 | RefSeq:XP_015164173.1 | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022404]
Coordinates
chr2:+:34927791..34932430
Molecular Weight (calculated)
66256.8 Da
IEP (calculated)
7.048
GRAVY (calculated)
-0.142
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMNPSLKKP RESVDLSNSS ELTQSAFPDE VLEKVLSLVQ SHKDRNSASL VCKDWYNAER WTRTKLFIGN CYSVTPEIVA RRFPKIKSVT LKGKPRFSDF
101: NLVPENWGAD IQAWLDVFAK VYPFLEELRL KRMAVSDESL EFLAKSFLGF KALSLLSCDG FSTDGISSVA AHCKNLTELD IQENGMDDIC GSWLSCFPDD
201: FTSLEVLNFA CMNTEISKDA LERLVGRCKS LRVLKVNKNV TLPQLQRLLV RAPQLMELGT GCFLPDQLTS RQYAELESAF SNCKHLHSLS GFWEANRRYL
301: PSLYAACARL TFLNLSYEAI RSGEFSKLLA HCPNLRRLWV LDTVKDKGLE AVGTSCPLLE ELRVFPADPF EEDMDHGVTE SGFVAVSAGC PKLQYVLYFC
401: RQMTNAAVAT IVRNCPNFTH FRLCIMNPGQ PDYLTNEPMD EAFGAVVKTC KKLQRLSVSG LLTDLTFEYI GKYAKNLETL SVAFAGSSDW GMQCVLDGCS
501: KLRKLEIRDS PFGNAALLSG MGKYESMRCL WMSACRVTMN GCRILAQERP RLNVEVIKDE HSDDYADKLY VYRSVAGPRK DAPPFVVTL
101: NLVPENWGAD IQAWLDVFAK VYPFLEELRL KRMAVSDESL EFLAKSFLGF KALSLLSCDG FSTDGISSVA AHCKNLTELD IQENGMDDIC GSWLSCFPDD
201: FTSLEVLNFA CMNTEISKDA LERLVGRCKS LRVLKVNKNV TLPQLQRLLV RAPQLMELGT GCFLPDQLTS RQYAELESAF SNCKHLHSLS GFWEANRRYL
301: PSLYAACARL TFLNLSYEAI RSGEFSKLLA HCPNLRRLWV LDTVKDKGLE AVGTSCPLLE ELRVFPADPF EEDMDHGVTE SGFVAVSAGC PKLQYVLYFC
401: RQMTNAAVAT IVRNCPNFTH FRLCIMNPGQ PDYLTNEPMD EAFGAVVKTC KKLQRLSVSG LLTDLTFEYI GKYAKNLETL SVAFAGSSDW GMQCVLDGCS
501: KLRKLEIRDS PFGNAALLSG MGKYESMRCL WMSACRVTMN GCRILAQERP RLNVEVIKDE HSDDYADKLY VYRSVAGPRK DAPPFVVTL
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Arabidopsis Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.