Factsheet for PGSC0003DMT400013682

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400039878
PGSC0003DMT400042074
PGSC0003DMT400046818
PGSC0003DMT400071582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	PGSC0003DMT400015610	AT1G04250.1	11713520
AT3G62980.1	PGSC0003DMT400015610	AT3G23050.1	11713520
AT3G62980.1	PGSC0003DMT400015655	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400034978	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400042074	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400039878	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400071582	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400046818	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008470.1.1	Tomato	extracellular	19.29	47.37
PGSC0003DMT400053430	Potato	cytosol	72.14	37.55
PGSC0003DMT400093216	Potato	mitochondrion	33.57	30.72
PGSC0003DMT400008765	Potato	cytosol	15.71	20.56
Solyc06g008810.2.1	Tomato	cytosol	60.71	20.19
PGSC0003DMT400056570	Potato	cytosol	82.14	19.36
PGSC0003DMT400029517	Potato	cytosol	75.0	18.07
GSMUA_Achr5P26930_001	Banana	cytosol	55.0	16.59
PGSC0003DMT400061752	Potato	plastid	67.86	16.38
KRH71533	Soybean	cytosol	67.86	16.24
KRH31921	Soybean	cytosol	67.86	16.24
KRH68108	Soybean	cytosol	67.86	16.21
Bra007720.1-P	Field mustard	cytosol	67.86	15.97
CDY11468	Canola	cytosol	67.86	15.97
CDY53998	Canola	cytosol	66.43	15.92
KRG96377	Soybean	cytosol	66.43	15.84
AT3G62980.1	Thale cress	cytosol	67.14	15.82
CDX76680	Canola	cytosol	67.14	15.8
Bra003518.1-P	Field mustard	cytosol	66.43	15.66
GSMUA_Achr3P23850_001	Banana	cytosol	60.71	14.6
CDX67912	Canola	endoplasmic reticulum, golgi	66.43	14.42
Solyc06g008780.1.1	Tomato	extracellular	47.14	13.31
Os05t0150500-00	Rice	plastid	53.57	12.78
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	53.57	12.73
TraesCS1A01G091300.1	Wheat	cytosol	53.57	12.67
Zm00001d010863_P001	Maize	plastid	52.86	12.54
TraesCS1D01G099900.1	Wheat	cytosol	53.57	12.5
KXG21312	Sorghum	plastid	52.14	12.35
CDY68868	Canola	cytosol	47.14	12.22
HORVU1Hr1G021550.4	Barley	cytosol	52.86	11.53
PGSC0003DMT400057711	Potato	cytosol	47.86	11.38
CDX89163	Canola	cytosol	50.0	11.18
Bra014378.1-P	Field mustard	cytosol	50.0	11.18
PGSC0003DMT400005419	Potato	cytosol	38.57	8.81
Solyc06g008460.1.1	Tomato	extracellular	0.71	0.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400013682	EnsemblPlantsGene:PGSC0003DMG400005348	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	PGSC:PGSC0003DMG400005348	UniParc:UPI000295C684	UniProt:M1A374	MapMan:35.1	:

Description

TIR1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005348]

Coordinates

chr6:+:1162825..1163247

Molecular Weight (calculated)

15862.0 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.086

Length

140 amino acids

Sequence
(BLAST)

001: MLVLGPLCNT ARNYNNFPFL ASLHIVFEYI GVHANKLEML SLAFAGDRDC PFGNEALLDN AAKLETMRSL WISNWSVSFE ACKLLAQKLP GLNVEVIDER
101: GPPDTRPESC PVEKLYIYRT VSGRRFDTPG FVWIIDEDQH

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.