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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62980.1 Solyc09g083290.2.1 AT1G04250.1 11713520
AT3G62980.1 Solyc09g083290.2.1 AT3G23050.1 11713520
AT3G62980.1 Solyc04g054280.1.1 AT4G14560.1 15546359
AT3G62980.1 Solyc06g053840.2.1 AT4G14560.1 15546359
AT3G62980.1 Solyc09g083280.2.1 AT4G14560.1 15546359
AT3G62980.1 Solyc04g079970.2.1 AT4G36800.1 12682009
AT3G62980.1 Solyc12g089030.1.1 AT4G36800.1 12682009
AT3G62980.1 Solyc03g112410.1.1 AT5G63110.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g008440.1.1 Tomato extracellular 13.3 87.5
Solyc06g008460.1.1 Tomato extracellular 49.17 87.34
Solyc06g008470.1.1 Tomato extracellular 11.64 85.96
PGSC0003DMT400053430 Potato cytosol 49.88 78.07
Solyc06g008780.1.1 Tomato extracellular 81.47 69.15
PGSC0003DMT400056570 Potato cytosol 89.55 63.47
PGSC0003DMT400013682 Potato cytosol, mitochondrion 20.19 60.71
Solyc05g009260.1.1 Tomato extracellular 10.45 54.32
Solyc09g074520.2.1 Tomato cytosol 74.58 54.04
GSMUA_Achr5P26930_001 Banana cytosol 59.14 53.66
KRH31921 Soybean cytosol 71.26 51.28
Solyc06g007840.2.1 Tomato extracellular, plastid 9.98 51.22
KRH71533 Soybean cytosol 70.78 50.94
KRH68108 Soybean cytosol 70.78 50.85
KRG96377 Soybean cytosol 69.83 50.09
CDY68868 Canola cytosol 62.71 48.89
CDY53998 Canola cytosol 67.7 48.8
CDY11468 Canola cytosol 68.88 48.74
CDX76680 Canola cytosol 68.65 48.57
Bra007720.1-P Field mustard cytosol 68.65 48.57
AT3G62980.1 Thale cress cytosol 68.17 48.32
Bra003518.1-P Field mustard cytosol 67.93 48.15
Solyc06g007830.1.1 Tomato endoplasmic reticulum, extracellular 12.83 47.37
CDX67912 Canola endoplasmic reticulum, golgi 67.93 44.34
GSMUA_Achr3P23850_001 Banana cytosol 58.43 42.27
CDX89163 Canola cytosol 62.71 42.17
Bra014378.1-P Field mustard cytosol 62.71 42.17
Os05t0150500-00 Rice plastid 56.29 40.37
Zm00001d010863_P001 Maize plastid 56.06 40.0
KXG21312 Sorghum plastid 55.82 39.76
TraesCS1A01G091300.1 Wheat cytosol 55.34 39.36
TraesCS1B01G119100.1 Wheat cytosol, peroxisome, plastid 54.87 39.22
TraesCS1D01G099900.1 Wheat cytosol 55.34 38.83
HORVU1Hr1G021550.4 Barley cytosol 54.16 35.51
Solyc02g079190.2.1 Tomato cytosol 48.46 34.75
Solyc04g074980.2.1 Tomato cytosol 43.71 29.53
Solyc06g084490.1.1 Tomato plastid 12.35 24.76
Solyc05g052620.2.1 Tomato cytosol 27.32 19.07
Protein Annotations
EnsemblPlants:Solyc06g008810.2.1EnsemblPlantsGene:Solyc06g008810.2Gene3D:3.80.10.10InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944PANTHER:PTHR43944:SF7SMART:SM00367SUPFAM:SSF52047UniParc:UPI000276691FUniProt:K4C3R1
MapMan:11.2.2.1.1MapMan:19.2.2.8.1.4.6::::
Description
No Description!
Coordinates
chr6:-:2751079..2755743
Molecular Weight (calculated)
47114.5 Da
IEP (calculated)
4.898
GRAVY (calculated)
-0.039
Length
421 amino acids
Sequence
(BLAST)
001: MVSEYFSPYW NLRELDLGES EAEDPSGHWL GHFPDSYTSL VSFNIACLAS EVSFSALERL VARSPHLRTR RLNRAVPIEK FPKILRHASK LVEFGTGSYS
101: ADMQDDVSEV FINVSQAFSG CNQLKGLSGF WDVVPAYFPT IYPVHSKLTS LNLSYATIQI PDLSKLIGNC FNLQRLSGSV LDYIEDSGLE EIANTCKELQ
201: ELRVFPFDLF APRPNVSLTE QGLVAVSMGC PKLQSVLYFC RQMTNDALVS IARNRPNMIR FHLCIIEPQT PDYLILEPLD TGFGAIVQHC KEVQRLSLSG
301: LLTDRVFEYI GVHAMKLEML SLAFAGDSDL GLLYVLSGCE NLRKLEIRDC PFGDEALLAN AAKLESGDNL LAQKLPGLNV EVIDERGHPD TRPESCSVEK
401: LYIYRTVSGR RFDTPGFVLD Y
Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Arabidopsis Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.