Factsheet for PGSC0003DMT400056570

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400039878
PGSC0003DMT400042074
PGSC0003DMT400046818
PGSC0003DMT400071582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	PGSC0003DMT400015610	AT1G04250.1	11713520
AT3G62980.1	PGSC0003DMT400015610	AT3G23050.1	11713520
AT3G62980.1	PGSC0003DMT400015655	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400034978	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400042074	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400039878	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400071582	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400046818	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053430	Potato	cytosol	43.43	95.91
Solyc06g008460.1.1	Tomato	extracellular	36.03	90.3
Solyc06g008810.2.1	Tomato	cytosol	63.47	89.55
Solyc06g008470.1.1	Tomato	extracellular	8.08	84.21
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	19.36	82.14
PGSC0003DMT400029517	Potato	cytosol	78.62	80.38
PGSC0003DMT400093216	Potato	mitochondrion	20.54	79.74
Solyc06g008780.1.1	Tomato	extracellular	63.8	76.41
PGSC0003DMT400061752	Potato	plastid	74.24	76.03
CDY68868	Canola	cytosol	67.68	74.44
KRH31921	Soybean	cytosol	72.9	74.02
KRH71533	Soybean	cytosol	72.9	74.02
KRH68108	Soybean	cytosol	72.39	73.38
KRG96377	Soybean	cytosol	71.89	72.74
CDY53998	Canola	cytosol	71.38	72.6
AT3G62980.1	Thale cress	cytosol	72.56	72.56
CDY11468	Canola	cytosol	72.56	72.44
Bra007720.1-P	Field mustard	cytosol	72.56	72.44
CDX76680	Canola	cytosol	72.39	72.27
Bra003518.1-P	Field mustard	cytosol	71.38	71.38
PGSC0003DMT400008765	Potato	cytosol	12.79	71.03
GSMUA_Achr5P26930_001	Banana	cytosol	51.85	66.38
CDX67912	Canola	endoplasmic reticulum, golgi	71.72	66.05
Bra014378.1-P	Field mustard	cytosol	66.67	63.26
CDX89163	Canola	cytosol	66.5	63.1
GSMUA_Achr3P23850_001	Banana	cytosol	61.45	62.71
Os05t0150500-00	Rice	plastid	58.08	58.77
KXG21312	Sorghum	plastid	58.25	58.54
Zm00001d010863_P001	Maize	plastid	58.08	58.47
TraesCS1A01G091300.1	Wheat	cytosol	57.74	57.94
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	57.41	57.89
TraesCS1D01G099900.1	Wheat	cytosol	57.58	57.0
PGSC0003DMT400057711	Potato	cytosol	52.36	52.8
HORVU1Hr1G021550.4	Barley	cytosol	56.73	52.49
PGSC0003DMT400005419	Potato	cytosol	47.14	45.68

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1BZM8	PFAM:PF12937	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG400021996	PGSC:PGSC0003DMG400021996	EnsemblPlants:PGSC0003DMT400056570	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000295C7F7	:	:

Description

Transport inhibitor response 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021996]

Coordinates

chr6:+:833031..838566

Molecular Weight (calculated)

66387.1 Da

IEP (calculated)

5.848

GRAVY (calculated)

0.027

Length

594 amino acids

Sequence
(BLAST)

001: MVNSLPLEVL EHIFSDITLD KDRNSISLVC KSWYEAERCC RKSVFIGNCY AVSPSILIRR FPDLRSVTIK GKPHFADFDL VPEGWGAYFY PWAVSMAKSY
101: PFLEEIRLKR MVVCDESLEL ISKSFKNFRV LVLQSCEGFT TDGLAAIAAN CRNLRELDLG ESEVEDLSGH WLSHFPDSCT SLVSLNIACL ASEVSFSALE
201: RLVARSPHLR TLRLNRAVSI EKLPKLLRHA SKLVEFGTGS YSADMQADVS EVFVNVSQAF SGCNQLKGLS GFWDAVPAYF PTIYPVHSKL TSLNLSYATI
301: QIPDLGKLIG NCLNLQRLWV LDYIEDSGLE EIANTCKELQ ELRVFPSDPF APGPNVSLTE QGLVAVSMGC PKLQSVLYFC RQMTNEALVI IARNRPNMIR
401: FRLCIIEPRT PDYVTLEPLD AGFGAIVQHC KELRRLSLSG LLTDRVFEYI GVHAKKLEML SLAFAGDSDL GLHYVLSGCE SLRKLEIRDC PFGDEALLAN
501: AAKLETMRSL WMSNCSVSFE ACKLLAQKLP GLNVEVIDER GHPDTRPESC PVEKLYIYRT VSGRRFDTPG FVWIIDEDAA LTQYSNGNCS LASS

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.