Factsheet for Solyc06g008470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009260.1.1	Tomato	extracellular	52.63	37.04
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	70.18	35.09
Solyc06g008440.1.1	Tomato	extracellular	22.81	20.31
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	47.37	19.29
PGSC0003DMT400053430	Potato	cytosol	80.7	17.1
Solyc06g008810.2.1	Tomato	cytosol	85.96	11.64
Solyc06g008780.1.1	Tomato	extracellular	78.95	9.07
GSMUA_Achr5P26930_001	Banana	cytosol	70.18	8.62
PGSC0003DMT400056570	Potato	cytosol	84.21	8.08
Solyc09g074520.2.1	Tomato	cytosol	77.19	7.57
KRH31921	Soybean	cytosol	77.19	7.52
KRH71533	Soybean	cytosol	77.19	7.52
CDX76680	Canola	cytosol	77.19	7.39
CDY11468	Canola	cytosol	77.19	7.39
Bra007720.1-P	Field mustard	cytosol	77.19	7.39
KRH68108	Soybean	cytosol	75.44	7.34
KRG96377	Soybean	cytosol	75.44	7.33
Bra003518.1-P	Field mustard	cytosol	75.44	7.24
AT3G62980.1	Thale cress	cytosol	75.44	7.24
CDY68868	Canola	cytosol	68.42	7.22
CDY53998	Canola	cytosol	73.68	7.19
Os05t0150500-00	Rice	plastid	71.93	6.98
Zm00001d010863_P001	Maize	plastid	71.93	6.95
KXG21312	Sorghum	plastid	71.93	6.94
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	70.18	6.79
TraesCS1A01G091300.1	Wheat	cytosol	70.18	6.76
GSMUA_Achr3P23850_001	Banana	cytosol	68.42	6.7
CDX67912	Canola	endoplasmic reticulum, golgi	75.44	6.67
TraesCS1D01G099900.1	Wheat	cytosol	68.42	6.5
HORVU1Hr1G021550.4	Barley	cytosol	70.18	6.23
Solyc02g079190.2.1	Tomato	cytosol	52.63	5.11
Solyc04g074980.2.1	Tomato	cytosol	52.63	4.82
Solyc05g052620.2.1	Tomato	cytosol	36.84	3.48
Solyc06g084490.1.1	Tomato	plastid	12.28	3.33
CDX89163	Canola	cytosol	31.58	2.88
Bra014378.1-P	Field mustard	cytosol	31.58	2.88
Solyc06g007840.2.1	Tomato	extracellular, plastid	0.0	0.0
Solyc06g008460.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g008470.1.1	EnsemblPlantsGene:Solyc06g008470.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	UniParc:UPI0002766725	UniProt:K4C3M7	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:+:2372010..2372183

Molecular Weight (calculated)

6035.2 Da

IEP (calculated)

4.027

GRAVY (calculated)

0.335

Length

57 amino acids

Sequence
(BLAST)

1: MLSLAFAGDS DLGLLYVLSG CESLRKLEIR DCPFGDEALL ANAAKLESGD HAIPLDV

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.