Factsheet for Solyc12g089030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099290.2.1
Solyc05g009260.1.1
Solyc06g007830.1.1
Solyc06g007840.2.1
Solyc06g008440.1.1
Solyc06g008460.1.1
Solyc06g008470.1.1
Solyc06g008780.1.1
Solyc06g008810.2.1
Solyc06g084490.1.1
Solyc09g074520.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	Solyc05g009260.1.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g007830.1.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g007840.2.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g008440.1.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g008460.1.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g008470.1.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g008780.1.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g008810.2.1	AT3G62980.1	12682009
AT4G36800.1	Solyc06g084490.1.1	AT3G62980.1	12682009
AT4G36800.1	Solyc09g074520.2.1	AT3G62980.1	12682009
AT4G36800.1	Solyc01g099290.2.1	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039878	Potato	cytosol	95.63	95.63
Solyc04g079970.2.1	Tomato	cytosol	91.26	91.26
VIT_04s0023g01280.t01	Wine grape	cytosol	86.34	86.34
KRH76867	Soybean	cytosol	85.79	85.79
KRH28611	Soybean	cytosol	85.79	85.79
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	36.07	82.5
AT4G36800.1	Thale cress	cytosol	82.51	82.07
Bra010575.1-P	Field mustard	cytosol	81.42	80.54
Bra014836.1-P	Field mustard	cytosol	81.42	79.68
Bra011708.1-P	Field mustard	cytosol	80.33	79.46
Bra038542.1-P	Field mustard	cytosol	79.23	78.8
Bra017784.1-P	Field mustard	cytosol	80.33	78.61
EER88903	Sorghum	cytosol	75.96	75.96
Os10t0190000-02	Rice	cytosol, nucleus	75.41	75.0
VIT_03s0063g02110.t01	Wine grape	golgi	87.98	74.88
TraesCS5A01G182800.1	Wheat	cytosol	74.86	74.86
TraesCS5D01G187200.1	Wheat	cytosol	74.86	74.86
GSMUA_Achr6P08850_001	Banana	cytosol	74.86	74.86
TraesCS6B01G023900.1	Wheat	cytosol	74.32	74.32
TraesCS6A01G016200.1	Wheat	cytosol	74.32	74.32
GSMUA_Achr3P13610_001	Banana	cytosol	74.32	74.32
TraesCS6D01G019200.1	Wheat	cytosol	74.32	74.32
TraesCS5B01G180900.1	Wheat	cytosol	74.32	74.32
HORVU5Hr1G055840.2	Barley	cytosol	73.77	73.77
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	74.32	73.51
Bra036361.1-P	Field mustard	cytosol	78.69	72.73
HORVU6Hr1G003170.2	Barley	mitochondrion	74.32	72.34
Zm00001d036481_P001	Maize	cytosol	77.05	70.85
EES13692	Sorghum	cytosol	69.95	69.95
Os09t0321900-01	Rice	plastid	68.31	68.31
CDY30311	Canola	mitochondrion	79.23	62.5
Solyc02g085690.2.1	Tomato	extracellular, vacuole	73.77	59.73
Os08t0374100-01	Rice	cytosol, nucleus	74.86	59.05
GSMUA_Achr2P23180_001	Banana	cytosol	75.96	56.5
CDY51497	Canola	nucleus	78.69	55.81
Solyc06g007500.1.1	Tomato	cytosol	69.4	48.47
Zm00001d014671_P001	Maize	nucleus	66.12	25.64

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0019788
GO:GO:0045116	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4DGX4	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc12g089030.1
EnsemblPlants:Solyc12g089030.1.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00027695C8	:

Description

No Description!

Coordinates

chr12:+:64189083..64191117

Molecular Weight (calculated)

20790.8 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.401

Length

183 amino acids

Sequence
(BLAST)

001: MIKLFKVKEK QRELAENANG KPPIKKQSAG ELRLHKDISE LNLPETCSIS FPNGKDDLMN FEVTIRPDEG YYVGGTFVFS FSISSIYPHE APKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTII YGLYHLFTEP NHEDPLNHEA AAVLSDNPSL FESNVRRAMS GGYVGETFFQ RCI

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.