Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010863_P001 | |
| Zm00001d012969_P008 | |
| Zm00001d034640_P003 | |
| Zm00001d042193_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88903 | Sorghum | cytosol | 90.45 | 98.36 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 84.42 | 91.3 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 77.89 | 84.7 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 75.38 | 81.97 |
| PGSC0003DMT400039878 | Potato | cytosol | 73.37 | 79.78 |
| Solyc04g079970.2.1 | Tomato | cytosol | 72.86 | 79.23 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 72.36 | 78.69 |
| Bra038542.1-P | Field mustard | cytosol | 71.36 | 77.17 |
| Solyc12g089030.1.1 | Tomato | cytosol | 70.85 | 77.05 |
| KRH76867 | Soybean | cytosol | 70.85 | 77.05 |
| KRH28611 | Soybean | cytosol | 70.85 | 77.05 |
| AT4G36800.1 | Thale cress | cytosol | 70.85 | 76.63 |
| Bra010575.1-P | Field mustard | cytosol | 70.35 | 75.68 |
| Bra014836.1-P | Field mustard | cytosol | 70.35 | 74.87 |
| Bra011708.1-P | Field mustard | cytosol | 69.35 | 74.59 |
| Bra017784.1-P | Field mustard | cytosol | 69.35 | 73.8 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 67.34 | 72.43 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 76.88 | 71.16 |
| Bra036361.1-P | Field mustard | cytosol | 68.84 | 69.19 |
| Solyc10g039370.1.1 | Tomato | nucleus, peroxisome, plastid | 27.14 | 67.5 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 80.9 | 65.45 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 62.31 | 62.94 |
| CDY30311 | Canola | mitochondrion | 71.36 | 61.21 |
| PGSC0003DMT400071582 | Potato | cytosol | 63.32 | 56.76 |
| CDY51497 | Canola | nucleus | 71.36 | 55.04 |
| Solyc02g085690.2.1 | Tomato | extracellular, vacuole | 60.8 | 53.54 |
| Solyc06g007500.1.1 | Tomato | cytosol | 57.29 | 43.51 |
| PGSC0003DMT400032948 | Potato | cytosol | 59.3 | 37.7 |
| PGSC0003DMT400053003 | Potato | cytosol | 32.66 | 35.52 |
| Zm00001d014671_P001 | Maize | nucleus | 74.37 | 31.36 |
Protein Annotations
| EntrezGene:100286302 | MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | UniProt:A0A1D6LNL8 | ProteinID:AQK81133.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 | PANTHER:PTHR43953:SF1 |
| SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0004DE9C9C |
| EnsemblPlantsGene:Zm00001d036481 | EnsemblPlants:Zm00001d036481_P001 | EnsemblPlants:Zm00001d036481_T001 | SEG:seg | : | : |
Description
NEDD8-conjugating enzyme Ubc12
Coordinates
chr6:-:90056629..90059704
Molecular Weight (calculated)
22315.8 Da
IEP (calculated)
9.068
GRAVY (calculated)
-0.469
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTVFGIGNP PNSSRKMINL FKIKGQKKEE AASAAGKAPV KKQSAGELRL HKDISELNLP KTTSISFPNG KDDLMNFETT IRPDEGYYMG GTFVFTFQVS
101: PSYPHDPPKV KCKTKVYHPN IDLEGNVCLN ILREDWKPVL NINTVIYGLN LLFTQPNDED PLNHEAAVVL RDNPKMFEAN VRRAMAGGYV GQHYFQRCA
101: PSYPHDPPKV KCKTKVYHPN IDLEGNVCLN ILREDWKPVL NINTVIYGLN LLFTQPNDED PLNHEAAVVL RDNPKMFEAN VRRAMAGGYV GQHYFQRCA
001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
Arabidopsis Description
RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.