Factsheet for PGSC0003DMT400032948

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085690.2.1	Tomato	extracellular, vacuole	53.35	73.89
PGSC0003DMT400039878	Potato	cytosol	42.17	72.13
GSMUA_Achr3P13610_001	Banana	cytosol	40.58	69.4
GSMUA_Achr6P08850_001	Banana	cytosol	39.94	68.31
Os10t0190000-02	Rice	cytosol, nucleus	39.3	66.85
TraesCS6A01G016200.1	Wheat	cytosol	38.98	66.67
TraesCS6B01G023900.1	Wheat	cytosol	38.98	66.67
TraesCS6D01G019200.1	Wheat	cytosol	38.98	66.67
HORVU5Hr1G055840.2	Barley	cytosol	38.66	66.12
TraesCS5A01G182800.1	Wheat	cytosol	38.66	66.12
TraesCS5B01G180900.1	Wheat	cytosol	38.66	66.12
TraesCS5D01G187200.1	Wheat	cytosol	38.66	66.12
EER88903	Sorghum	cytosol	38.34	65.57
HORVU6Hr1G003170.2	Barley	mitochondrion	38.98	64.89
Os09t0321900-01	Rice	plastid	37.7	64.48
EES13692	Sorghum	cytosol	37.7	64.48
VIT_18s0001g12010.t01	Wine grape	cytosol	38.34	60.91
Zm00001d036481_P001	Maize	cytosol	37.7	59.3
Os08t0374100-01	Rice	cytosol, nucleus	38.98	52.59
GSMUA_Achr2P23180_001	Banana	cytosol	40.89	52.03
PGSC0003DMT400071582	Potato	cytosol	34.82	49.1
PGSC0003DMT400053003	Potato	cytosol	20.45	34.97
Zm00001d014671_P001	Maize	nucleus	33.87	22.46

Protein Annotations

EntrezGene:102581034	MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M1AYD1
PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400012657	PGSC:PGSC0003DMG400012657	EnsemblPlants:PGSC0003DMT400032948	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000295B7C2	:	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012657]

Coordinates

chr2:-:40920098..40928103

Molecular Weight (calculated)

35192.4 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.286

Length

313 amino acids

Sequence
(BLAST)

001: MIKLFKVKEK QREDTENGNA RGPCNKQTAG ELRLRKDITE LNLPRSCTIS FPDGKDKLMN FEIKIQPDGG YYAGGNFLFS FQVPSIYPHE PPKVKCKTKV
101: YHPNIDLEGN VCLNVLREDW KPVLNINTII YGLYLLFEEP NHEDPLNLEA AAVLRDSPQL FKSNVKKAML GGTVANVPST YPREPPKVKC KTKEPNHEDP
201: LNLEAAVVLG DNPELFKSNV KRAMHGVTVV NISFTQCVVF WSKQIPIKWA GFTSTIIDKQ ANPVLSLFQF ANAEATTAML ECLMPGNSVC LFTSLNFEYD
301: LLDEATAVQQ HFI

Best Arabidopsis Sequence Match ( AT2G18600.2 )
(BLAST)

001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM

Arabidopsis Description

RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.