Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G021550.4 | |
| HORVU3Hr1G098530.4 | |
| HORVU3Hr1G105710.1 | |
| HORVU5Hr1G081370.10 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G019200.1 | Wheat | cytosol | 97.34 | 100.0 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 97.34 | 100.0 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 97.34 | 100.0 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 95.21 | 97.81 |
| Os09t0321900-01 | Rice | plastid | 83.51 | 85.79 |
| EES13692 | Sorghum | cytosol | 81.38 | 83.61 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 77.66 | 79.78 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 77.13 | 79.23 |
| Solyc04g079970.2.1 | Tomato | cytosol | 74.47 | 76.5 |
| Bra038542.1-P | Field mustard | cytosol | 73.4 | 75.0 |
| Solyc12g089030.1.1 | Tomato | cytosol | 72.34 | 74.32 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 71.81 | 73.77 |
| PGSC0003DMT400039878 | Potato | cytosol | 71.81 | 73.77 |
| KRH76867 | Soybean | cytosol | 71.81 | 73.77 |
| KRH28611 | Soybean | cytosol | 71.81 | 73.77 |
| AT4G36800.1 | Thale cress | cytosol | 70.21 | 71.74 |
| Bra010575.1-P | Field mustard | cytosol | 69.68 | 70.81 |
| Bra014836.1-P | Field mustard | cytosol | 70.21 | 70.59 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 69.15 | 70.27 |
| Bra011708.1-P | Field mustard | cytosol | 69.15 | 70.27 |
| Bra017784.1-P | Field mustard | cytosol | 69.15 | 69.52 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 76.06 | 66.51 |
| Solyc10g039370.1.1 | Tomato | nucleus, peroxisome, plastid | 28.19 | 66.25 |
| Bra036361.1-P | Field mustard | cytosol | 68.09 | 64.65 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 64.89 | 61.93 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 79.79 | 60.98 |
| CDY30311 | Canola | mitochondrion | 73.94 | 59.91 |
| Solyc02g085690.2.1 | Tomato | extracellular, vacuole | 65.43 | 54.42 |
| PGSC0003DMT400071582 | Potato | cytosol | 63.3 | 53.6 |
| CDY51497 | Canola | nucleus | 72.87 | 53.1 |
| Solyc06g007500.1.1 | Tomato | cytosol | 56.38 | 40.46 |
| PGSC0003DMT400032948 | Potato | cytosol | 64.89 | 38.98 |
| PGSC0003DMT400053003 | Potato | cytosol | 32.98 | 33.88 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | UniProt:A0A287T5V5 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | EnsemblPlantsGene:HORVU6Hr1G003170 | EnsemblPlants:HORVU6Hr1G003170.2 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 | PANTHER:PTHR43953:SF3 |
| SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000B4602DE |
Description
No Description!
Coordinates
chrchr6H:-:7538799..7543555
Molecular Weight (calculated)
21339.6 Da
IEP (calculated)
9.088
GRAVY (calculated)
-0.653
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHRKMINLF KIKGQKKEEA ANSNGGPPVK KQSPGELRLH KDIAELNLPK TTKISFPNGK DDLMNFEATL RPDEGYYLGG SFTFTFQVSP SYPHEAPKVK
101: CKTKVYHPNI DLEGNVCLNI LREDWKPVLN INTIIYGLNL LFSQPNDEDP LNHEAAAVLR DNPQKFQRNV QMAMSGGYVD NTHFPRCK
101: CKTKVYHPNI DLEGNVCLNI LREDWKPVLN INTIIYGLNL LFSQPNDEDP LNHEAAAVLR DNPQKFQRNV QMAMSGGYVD NTHFPRCK
001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
Arabidopsis Description
RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.