Factsheet for Solyc02g085690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089030.1.1	Tomato	cytosol	59.73	73.77
Solyc04g079970.2.1	Tomato	cytosol	58.41	72.13
GSMUA_Achr3P13610_001	Banana	cytosol	56.19	69.4
GSMUA_Achr6P08850_001	Banana	cytosol	54.87	67.76
Os10t0190000-02	Rice	cytosol, nucleus	54.42	66.85
TraesCS6D01G019200.1	Wheat	cytosol	53.98	66.67
TraesCS6B01G023900.1	Wheat	cytosol	53.98	66.67
TraesCS6A01G016200.1	Wheat	cytosol	53.98	66.67
TraesCS5B01G180900.1	Wheat	cytosol	53.54	66.12
EER88903	Sorghum	cytosol	53.54	66.12
HORVU5Hr1G055840.2	Barley	cytosol	53.54	66.12
TraesCS5A01G182800.1	Wheat	cytosol	53.54	66.12
TraesCS5D01G187200.1	Wheat	cytosol	53.54	66.12
HORVU6Hr1G003170.2	Barley	mitochondrion	54.42	65.43
Os09t0321900-01	Rice	plastid	51.77	63.93
EES13692	Sorghum	cytosol	51.77	63.93
Zm00001d036481_P001	Maize	cytosol	53.54	60.8
VIT_18s0001g12010.t01	Wine grape	cytosol	50.88	58.38
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	20.35	57.5
Os08t0374100-01	Rice	cytosol, nucleus	55.75	54.31
PGSC0003DMT400032948	Potato	cytosol	73.89	53.35
GSMUA_Achr2P23180_001	Banana	cytosol	57.52	52.85
Solyc06g007500.1.1	Tomato	cytosol	48.67	41.98
Zm00001d014671_P001	Maize	nucleus	48.67	23.31

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0019788
GO:GO:0045116	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4BB80	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc02g085690.2
EnsemblPlants:Solyc02g085690.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002769236	:

Description

No Description!

Coordinates

chr2:-:48508723..48512620

Molecular Weight (calculated)

25706.1 Da

IEP (calculated)

8.755

GRAVY (calculated)

-0.345

Length

226 amino acids

Sequence
(BLAST)

001: MVCYANPCFL SHSIYTNNFS SLLSPLKVFF IQFSPEESKS LEKMIKLFKV KEKQREDTEN GNARGPYNKQ TAGELRLRKD ITELNLPRSC TISFPDGKDK
101: LMSFEIKIQP GGGYYAGGKF LFSFQVPSIY PHEPPKVKCK TKVYHPNIDL EGNVCLNVLR EDWKPVLNIN TIIYGLYLLF EEPNHEDPLN LEAASVLRDN
201: PQLFKSNVKK AMLGGTVANV SFTRCL

Best Arabidopsis Sequence Match ( AT2G18600.2 )
(BLAST)

001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM

Arabidopsis Description

RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.