Factsheet for TraesCS6D01G019200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G091300.1
TraesCS1B01G119100.1
TraesCS1D01G099900.1
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1
TraesCS5A01G318500.3
TraesCS5A01G476800.1
TraesCS5B01G319000.2
TraesCS5B01G489700.1
TraesCS5D01G324800.3
TraesCS5D01G490100.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	TraesCS5A01G318500.3	AT1G05180.1	12682009
AT4G36800.1	TraesCS5A01G476800.1	AT1G05180.1	12682009
AT4G36800.1	TraesCS5B01G319000.2	AT1G05180.1	12682009
AT4G36800.1	TraesCS5B01G489700.1	AT1G05180.1	12682009
AT4G36800.1	TraesCS5D01G324800.3	AT1G05180.1	12682009
AT4G36800.1	TraesCS5D01G490100.3	AT1G05180.1	12682009
AT4G36800.1	TraesCS1A01G091300.1	AT3G62980.1	12682009
AT4G36800.1	TraesCS1B01G119100.1	AT3G62980.1	12682009
AT4G36800.1	TraesCS1D01G099900.1	AT3G62980.1	12682009
AT4G36800.1	TraesCS3A01G457400.1	AT4G02570.1	12682009
AT4G36800.1	TraesCS3B01G497300.1	AT4G02570.1	12682009
AT4G36800.1	TraesCS3D01G450200.1	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G023900.1	Wheat	cytosol	100.0	100.0
TraesCS6A01G016200.1	Wheat	cytosol	100.0	100.0
HORVU6Hr1G003170.2	Barley	mitochondrion	100.0	97.34
TraesCS5D01G187200.1	Wheat	cytosol	97.27	97.27
Os09t0321900-01	Rice	plastid	85.79	85.79
EES13692	Sorghum	cytosol	83.61	83.61
GSMUA_Achr6P08850_001	Banana	cytosol	79.78	79.78
GSMUA_Achr3P13610_001	Banana	cytosol	79.23	79.23
Solyc04g079970.2.1	Tomato	cytosol	76.5	76.5
Bra038542.1-P	Field mustard	cytosol	75.41	75.0
Solyc12g089030.1.1	Tomato	cytosol	74.32	74.32
VIT_04s0023g01280.t01	Wine grape	cytosol	73.77	73.77
PGSC0003DMT400039878	Potato	cytosol	73.77	73.77
KRH76867	Soybean	cytosol	73.77	73.77
KRH28611	Soybean	cytosol	73.77	73.77
AT4G36800.1	Thale cress	cytosol	72.13	71.74
Bra010575.1-P	Field mustard	cytosol	71.58	70.81
Bra014836.1-P	Field mustard	cytosol	72.13	70.59
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	71.04	70.27
Bra011708.1-P	Field mustard	cytosol	71.04	70.27
Bra017784.1-P	Field mustard	cytosol	71.04	69.52
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	28.96	66.25
VIT_03s0063g02110.t01	Wine grape	golgi	77.05	65.58
Bra036361.1-P	Field mustard	cytosol	69.95	64.65
VIT_18s0001g12010.t01	Wine grape	cytosol	66.67	61.93
GSMUA_Achr2P23180_001	Banana	cytosol	81.42	60.57
CDY30311	Canola	mitochondrion	75.41	59.48
Solyc02g085690.2.1	Tomato	extracellular, vacuole	66.67	53.98
PGSC0003DMT400071582	Potato	cytosol	65.03	53.6
CDY51497	Canola	nucleus	74.86	53.1
Solyc06g007500.1.1	Tomato	cytosol	57.92	40.46
PGSC0003DMT400032948	Potato	cytosol	66.67	38.98
PGSC0003DMT400053003	Potato	cytosol	33.88	33.88

Protein Annotations

EnsemblPlants:TraesCS6D01G019200.1	EnsemblPlantsGene:TraesCS6D01G019200	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR43953	PANTHER:PTHR43953:SF3	PFAM:PF00179	PFscan:PS50127
ScanProsite:PS00183	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:19.2.2.3.4	:

Description

No Description!

Coordinates

chr6D:+:7735114..7740292

Molecular Weight (calculated)

20673.7 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.639

Length

183 amino acids

Sequence
(BLAST)

001: MINLFKIKGQ KKEEAANSNG GPPVKKQSPG ELRLHKDIAE LNLPKTTKIS FPNGKDDLMN FEATLRPDEG YYLGGSFTFT FQVSPSYPHE APKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTII YGLNLLFSQP NDEDPLNHEA AAVLRDNPQK FQRNVQMAMS GGYVDNTHFP RCK

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.