Factsheet for TraesCS5D01G324800.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G182800.1
TraesCS5B01G180900.1
TraesCS5D01G187200.1
TraesCS6A01G016200.1
TraesCS6B01G023900.1
TraesCS6D01G019200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05180.1	TraesCS5A01G182800.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5B01G180900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5D01G187200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6A01G016200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6B01G023900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6D01G019200.1	AT4G36800.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G318500.3	Wheat	cytosol	90.17	98.68
TraesCS5B01G319000.2	Wheat	golgi	90.69	91.96
TraesCS5D01G490100.3	Wheat	plastid	85.69	91.87
HORVU5Hr1G081370.10	Barley	cytosol, nucleus, plastid	92.41	91.0
Os03t0820100-01	Rice	cytosol	80.0	87.38
KXG37258	Sorghum	cytosol	79.66	87.33
Zm00001d034640_P003	Maize	cytosol, extracellular	79.31	86.96
Zm00001d012969_P008	Maize	cytosol	78.28	85.66
GSMUA_Achr5P02360_001	Banana	cytosol	65.17	71.59
VIT_12s0059g00610.t01	Wine grape	cytosol	62.76	69.6
KRH56132	Soybean	cytosol	61.03	67.69
KRH25373	Soybean	cytosol	60.34	66.92
CDY46837	Canola	nucleus	60.34	66.92
Bra015396.1-P	Field mustard	nucleus	57.24	66.53
CDY55450	Canola	cytosol	59.66	66.41
Bra032482.1-P	Field mustard	cytosol	54.48	66.11
CDY49510	Canola	cytosol	59.48	65.97
CDY06162	Canola	cytosol	58.62	65.89
CDY15536	Canola	cytosol	58.97	65.64
PGSC0003DMT400070486	Potato	cytosol	60.52	65.36
CDY48269	Canola	cytosol	58.79	64.95
AT2G32410.1	Thale cress	nucleus	58.45	64.82
Solyc11g072460.1.1	Tomato	cytosol	60.0	64.8
Bra005592.1-P	Field mustard	cytosol	58.62	64.76
Solyc12g005870.1.1	Tomato	cytosol	55.69	64.6
AT1G05180.1	Thale cress	cytosol	59.31	63.7
CDY12209	Canola	cytosol	58.62	63.67
CDY10045	Canola	cytosol	51.55	62.29
CDX98913	Canola	cytosol	10.69	59.62
CDY31150	Canola	cytosol	10.69	59.62
Bra020995.1-P	Field mustard	cytosol	11.38	55.46
AT3G25880.2	Thale cress	cytosol	7.07	55.41
CDY49508	Canola	cytosol	29.66	53.75
CDX81957	Canola	cytosol	10.34	53.1
CDX97381	Canola	extracellular	16.55	44.86
TraesCS3D01G090000.1	Wheat	cytosol	13.97	24.4
TraesCS7D01G370300.1	Wheat	cytosol	13.97	24.4

Protein Annotations

MapMan:19.2.2.3.3.2	Gene3D:3.40.50.720	InterPro:APP-BP1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009987	GO:GO:0019538	GO:GO:0019781
GO:GO:0045116	PFAM:PF00899	PIRSF:PIRSF039099	PANTHER:PTHR10953	PANTHER:PTHR10953:SF29	SUPFAM:SSF69572
InterPro:ThiF_NAD_FAD-bd	EnsemblPlantsGene:TraesCS5D01G324800	EnsemblPlants:TraesCS5D01G324800.3	InterPro:Ubiquitin-activating_enz	TIGR:cd01493	SEG:seg

Description

No Description!

Coordinates

chr5D:-:416417485..416424830

Molecular Weight (calculated)

63768.4 Da

IEP (calculated)

6.212

GRAVY (calculated)

-0.127

Length

580 amino acids

Sequence
(BLAST)

001: MHGRAGAKRL APTSASREQL HAREGGVAIP HLVPLPLLGR SHRRETTASA AMAAAAAAAE PKTKYDRQLR IWGDQGQAAL EKASICLLNC GPTGTEALKN
101: LVLGGIGSVT VVDGSKVEQS DLGNNFLLDE GCLGQSRAKS ICSFLQELND AVKAKYVEES PATMIDTNPS FFSQFTVVLA TQLLESSLLK LDSICRSANI
201: VLVAARSYGL TGLVRVSIKE HCVIESKPDH SLDDLRLHNP WPELKQFAKS IDICDKDPVV HKHTPYIVIL VRLAEKWADA HDGQLPSTRQ EKREFKDLIR
301: AHMLNVDEDN YKEAVESSYK VSVTPGISDE IRQIIDDSSS EVNFSSSDFW VLVASLKEFI ANEGNGELPL EGTIPDMTSL TEYYVSLQKI YQAKAESDCL
401: AIEHRVKSIL RRIGRDPDSI SRACIKTFCK NTRKLKVCRY RSMEEEFSSP VLSEVKKYFA DEDSCFAMNF YVLLRAVDRL AANYSRLPGI FDSEIGEDVP
501: RLKEAAVSVL SDMGLKGSSL SEDLIAEVCR FAGAEIHPVA AFIGGVASQE VIKLVTKQFV PLNGTFIFNG IDLKSQVLAL

Best Arabidopsis Sequence Match ( AT1G05180.1 )
(BLAST)

001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL

Arabidopsis Description

AXR1NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WFT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.