Factsheet for PGSC0003DMT400070486

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072460.1.1	Tomato	cytosol	97.21	97.21
VIT_12s0059g00610.t01	Wine grape	cytosol	81.01	83.17
KRH56132	Soybean	cytosol	76.54	78.59
KRH25373	Soybean	cytosol	75.98	78.01
Bra015396.1-P	Field mustard	nucleus	70.2	75.55
Bra032482.1-P	Field mustard	cytosol	65.55	73.64
Bra005592.1-P	Field mustard	cytosol	71.69	73.33
GSMUA_Achr5P02360_001	Banana	cytosol	68.9	70.08
Os03t0820100-01	Rice	cytosol	67.41	68.17
KXG37258	Sorghum	cytosol	65.92	66.92
TraesCS5B01G489700.1	Wheat	cytosol	64.62	66.6
Zm00001d034640_P003	Maize	cytosol, extracellular	65.55	66.54
Bra020995.1-P	Field mustard	cytosol	14.71	66.39
TraesCS5A01G318500.3	Wheat	cytosol	65.36	66.23
TraesCS5A01G476800.1	Wheat	cytosol	65.18	66.04
Zm00001d012969_P008	Maize	cytosol	64.43	65.28
HORVU3Hr1G105710.1	Barley	cytosol, nucleus	8.75	65.28
TraesCS5D01G490100.3	Wheat	plastid	64.43	63.96
AT3G25880.2	Thale cress	cytosol	8.75	63.51
TraesCS5B01G319000.2	Wheat	golgi	65.55	61.54
TraesCS5D01G324800.3	Wheat	mitochondrion	65.36	60.52
CDY49508	Canola	cytosol	35.94	60.31
HORVU5Hr1G081370.10	Barley	cytosol, nucleus, plastid	65.74	59.93
PGSC0003DMT400069346	Potato	cytosol	14.34	24.06
PGSC0003DMT400039493	Potato	cytosol	13.97	23.22

Protein Annotations

EntrezGene:102602774	MapMan:19.2.2.3.3.2	Gene3D:3.40.50.720	InterPro:APP-BP1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009987
GO:GO:0019538	GO:GO:0019781	GO:GO:0045116	UniProt:M1CM99	PFAM:PF00899	EnsemblPlantsGene:PGSC0003DMG400027403
PGSC:PGSC0003DMG400027403	EnsemblPlants:PGSC0003DMT400070486	PIRSF:PIRSF039099	PANTHER:PTHR10953	PANTHER:PTHR10953:SF29	SUPFAM:SSF69572
InterPro:ThiF_NAD_FAD-bd	UniParc:UPI000294F631	InterPro:Ubiquitin-activating_enz	RefSeq:XP_006340391.1	RefSeq:XP_006340392.1	:

Description

ThiF family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027403]

Coordinates

chr11:+:44069117..44084483

Molecular Weight (calculated)

59710.2 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.195

Length

537 amino acids

Sequence
(BLAST)

001: MAEPKVKYDR QLRIWGEQGQ AALEKASICL LNCGPTGSET LKNLVLGGVG SITVVDGSKV EVGDLGNNFM VDESSVGESK AKCVCTFLQE LNDAVNAKFI
101: EDCPEELIET NPSFFSQFTL VIATQLVEDS MVKLDRICRE ANIILIFARS YGLMGLVRIS VKEHTVIESK PDHFLDDLRL NNPWPELTRF TETIDLNTTD
201: AVVHKHTPYI VILVKIAEEW ANTHGGNLPS TREEKREFKD LIKSKMITVD EENYKEAMEA SYKVFSPRGI GANLQKIIDD SCTEVDSNSS DFWVMVAALK
301: EFIANEGGGE TPLEGSIPDM TSSTELYVNL QKTYQAKAEA DFLVMEQRVR DLLKKIGRDP ASISKANIKS FSKNARKLAV CRYRLIEEEF NSPVQSELQK
401: YLTDEDHGTL QEANSVKVLP ENTAAGLYIL LRAADRFAVN YNKFPGQFDS EMDEDISRLK TTAVGLLNDL GCNSSALSED LINEMCRYGA SELHVVSAFV
501: GGVASQEVIK LITRQFIPMS GTFIFNGIDN NSQLLLL

Best Arabidopsis Sequence Match ( AT1G05180.1 )
(BLAST)

001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL

Arabidopsis Description

AXR1NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WFT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.