Factsheet for PGSC0003DMT400069346

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50680.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072080.2.1	Tomato	cytosol	93.12	93.71
PGSC0003DMT400039493	Potato	cytosol	82.19	81.42
VIT_17s0000g01270.t01	Wine grape	cytosol	73.75	73.06
KRH41120	Soybean	nucleus	62.19	70.82
KRH59806	Soybean	cytosol, nucleus	72.5	70.09
CDY08955	Canola	cytosol	22.5	67.92
AT5G50580.2	Thale cress	cytosol	67.81	67.81
AT5G50680.1	Thale cress	cytosol	67.81	67.81
GSMUA_AchrUn_...	Banana	cytosol	68.12	67.49
CDY34327	Canola	cytosol	67.81	67.39
CDX93356	Canola	cytosol	67.81	67.39
CDX92842	Canola	cytosol	67.81	67.39
Bra013848.1-P	Field mustard	cytosol	67.81	67.39
CDY03404	Canola	cytosol	67.5	67.08
AT4G24940.1	Thale cress	cytosol	65.94	65.53
Os11t0497000-01	Rice	cytosol	62.81	61.28
TraesCS7A01G352700.2	Wheat	cytosol	61.56	59.88
EES08513	Sorghum	cytosol	62.5	59.7
TraesCS3A01G090000.1	Wheat	cytosol	61.56	59.34
Zm00001d049163_P001	Maize	cytosol, extracellular	61.56	59.16
TraesCS3B01G105300.2	Wheat	cytosol	61.25	59.04
TraesCS3D01G090000.1	Wheat	cytosol	61.25	59.04
TraesCS7D01G370300.1	Wheat	cytosol	61.25	59.04
CDY08954	Canola	cytosol, mitochondrion	31.88	58.29
TraesCS7B01G275300.1	Wheat	cytosol	56.56	54.68
HORVU7Hr1G089410.1	Barley	cytosol, mitochondrion, nucleus	60.62	50.65
HORVU2Hr1G027820.1	Barley	cytosol	13.75	48.89
CDY08961	Canola	plastid	20.62	46.81
HORVU3Hr1G016010.1	Barley	cytosol, plastid	61.56	42.27
HORVU3Hr1G016090.4	Barley	peroxisome	32.19	40.71
PGSC0003DMT400070486	Potato	cytosol	24.06	14.34

Protein Annotations

EnsemblPlants:PGSC0003DMT400069346	EnsemblPlantsGene:PGSC0003DMG400026973	EntrezGene:102602368	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0008641	InterPro:ThiF_NAD_FAD-bd	InterPro:Ubiquitin-activating_enz	PANTHER:PTHR10953	PANTHER:PTHR10953:SF162	PFAM:PF00899
PGSC:PGSC0003DMG400026973	RefSeq:XP_006347391.1	SUPFAM:SSF69572	UniParc:UPI0002955FB4	UniProt:M1CKB7	MapMan:19.2.2.2.2.1

Description

Ubiquitin activating enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400026973]

Coordinates

chr6:-:52881135..52887717

Molecular Weight (calculated)

35919.4 Da

IEP (calculated)

5.183

GRAVY (calculated)

-0.116

Length

320 amino acids

Sequence
(BLAST)

001: MGKVGEELTE QETAIYDRQI RVWGVDAQRR LSKSHIFVSG LKGTVIEFCK NIVLAGVGSL TLNDDRLVTE ELLSANFLVP PDENVTRGKS LAELCCESLK
101: DFNPMVSVSV EKGDLANFDV EFFQKFDAVV ISCCSLLTKK SVNVKCRNLP RRVAFYTVEC RDSCGEIFVD LQNYSYSKKK KEETIECQLQ YPSFEEAIAV
201: PWRSLPKRTS KLYFAMRVLE RFEVLEKRNL QDNSADDLPN VLKLRKELCE AQCINESQIP VPLLQRLLAA RVEFPPVCAI IGGVLGQEVI KAISGKGDPL
301: KNFFLFDATD GKGIIEDISG

Best Arabidopsis Sequence Match ( AT5G50680.1 )
(BLAST)

001: MDGDELTEQE TALYDRQIRV WGAGAQRRLS KSHVLVSGIK GTVAEFCKNI VLAGVGSVTL LDDRLVTTEV FNANFLILPD ENAYVGKTVA EICCDSLKDF
101: NPMVHVSIEK GDLSTLGVDF FEKFDVVVIG YSSRATKKAV NEKCRNLAKD VAFYTVDCRG SCGEIFVDLQ NYKYTKKKLD ETVECELTFP SFEEAVSVPW
201: KPMPRRTAKL YFAMRVIELF EETEGRKPGE CSLSDLPRVL KLKKELCEGN SVSENHIPDI LLERLVSNNT EFPPACAIIG GILGQEVIKV ISGKGEPLKN
301: FFYFDAEDGK GVIEDLSHKL

Arabidopsis Description

SAE1B-2SUMO-activating enzyme subunit 1B-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DI12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.