CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50680.1	KRH23958	AT4G25200.1	21798944
AT5G50680.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41120	Soybean	nucleus	77.95	91.81
VIT_17s0000g01270.t01	Wine grape	cytosol	74.92	76.78
PGSC0003DMT400069346	Potato	cytosol	70.09	72.5
PGSC0003DMT400039493	Potato	cytosol	70.39	72.14
Solyc06g072080.2.1	Tomato	cytosol	68.28	71.07
AT5G50580.2	Thale cress	cytosol	68.28	70.62
AT5G50680.1	Thale cress	cytosol	68.28	70.62
CDY34327	Canola	cytosol	67.67	69.57
Bra013848.1-P	Field mustard	cytosol	67.67	69.57
CDY03404	Canola	cytosol	67.07	68.94
CDX93356	Canola	cytosol	66.77	68.63
CDX92842	Canola	cytosol	66.77	68.63
AT4G24940.1	Thale cress	cytosol	66.16	68.01
Solyc03g019730.2.1	Tomato	mitochondrion	70.69	67.63
GSMUA_AchrUn_...	Banana	cytosol	65.86	67.49
CDY08955	Canola	cytosol	21.15	66.04
CDY08954	Canola	cytosol, mitochondrion	32.93	62.29
Os11t0497000-01	Rice	cytosol	60.73	61.28
TraesCS7A01G352700.2	Wheat	cytosol	60.12	60.49
EES08513	Sorghum	cytosol	60.42	59.7
TraesCS7D01G370300.1	Wheat	cytosol	59.52	59.34
Zm00001d049163_P001	Maize	cytosol, extracellular	59.52	59.16
TraesCS3D01G090000.1	Wheat	cytosol	58.31	58.13
TraesCS3A01G090000.1	Wheat	cytosol	57.7	57.53
TraesCS3B01G105300.2	Wheat	cytosol	57.7	57.53
TraesCS7B01G275300.1	Wheat	cytosol	55.29	55.29
HORVU7Hr1G089410.1	Barley	cytosol, mitochondrion, nucleus	60.73	52.48
HORVU2Hr1G027820.1	Barley	cytosol	12.08	44.44
CDY08961	Canola	plastid	18.73	43.97
HORVU3Hr1G016010.1	Barley	cytosol, plastid	58.31	41.42
HORVU3Hr1G016090.4	Barley	peroxisome	30.51	39.92
KRH56132	Soybean	cytosol	22.36	14.15
KRH25373	Soybean	cytosol	21.75	13.77

Protein Annotations

EntrezGene:100807922	MapMan:19.2.2.2.2.1	Gene3D:3.40.50.720	EMBL:ACUP02003342	EnsemblPlantsGene:GLYMA_05G204000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009987	GO:GO:0016925	GO:GO:0019538
GO:GO:0019948	UniProt:I1K6N8	EnsemblPlants:KRH59806	ProteinID:KRH59806	ProteinID:KRH59806.1	PFAM:PF00899
PANTHER:PTHR10953	PANTHER:PTHR10953:SF162	SUPFAM:SSF69572	InterPro:ThiF_NAD_FAD-bd	UniParc:UPI00023C47EA	InterPro:Ubiquitin-activating_enz

Description

hypothetical protein

Coordinates

chr5:-:38752639..38756837

Molecular Weight (calculated)

36848.3 Da

IEP (calculated)

5.562

GRAVY (calculated)

-0.156

Length

331 amino acids

Sequence
(BLAST)

001: MVSWNRLRLG MDGDGEELTA QETALYDRQI RVWGADAQRR LSKSHVLVYG MKGTVAEFCK NIVLAGVGSL TLVDDRAATE EMLSSNFLIP PDENVYSGKT
101: LAELCCNSLK DFNPMVHVSV EKGDLSSFDV EFLSKFDVVV VSCCTLSAKK LANGKCRKLS KRVAFYAVDC RDSCGEIFVD LQDYKYSKKK QDETVECDLK
201: YPSFEDALSV PWRALHRRMS KLYYAMRVIE KFEEAEGRST GEVSIADFSG LLKLKKEICT AQSLNESQVP DSLLKRLVTN ATEFPPVCAI IGGILGQEVI
301: KAISGKGDPL KNFFFFDAFD GKGIIEDISP K

Best Arabidopsis Sequence Match ( AT5G50680.1 )
(BLAST)

001: MDGDELTEQE TALYDRQIRV WGAGAQRRLS KSHVLVSGIK GTVAEFCKNI VLAGVGSVTL LDDRLVTTEV FNANFLILPD ENAYVGKTVA EICCDSLKDF
101: NPMVHVSIEK GDLSTLGVDF FEKFDVVVIG YSSRATKKAV NEKCRNLAKD VAFYTVDCRG SCGEIFVDLQ NYKYTKKKLD ETVECELTFP SFEEAVSVPW
201: KPMPRRTAKL YFAMRVIELF EETEGRKPGE CSLSDLPRVL KLKKELCEGN SVSENHIPDI LLERLVSNNT EFPPACAIIG GILGQEVIKV ISGKGEPLKN
301: FFYFDAEDGK GVIEDLSHKL

Arabidopsis Description

SAE1B-2SUMO-activating enzyme subunit 1B-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DI12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.