Factsheet for Solyc03g019730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50680.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039493	Potato	cytosol	90.46	96.9
Solyc06g072080.2.1	Tomato	cytosol	74.28	80.82
VIT_17s0000g01270.t01	Wine grape	cytosol	67.63	72.45
KRH41120	Soybean	nucleus	58.38	71.89
KRH59806	Soybean	cytosol, nucleus	67.63	70.69
GSMUA_AchrUn_...	Banana	cytosol	64.45	69.04
Bra013848.1-P	Field mustard	cytosol	64.16	68.94
CDY34327	Canola	cytosol	64.16	68.94
CDX92842	Canola	cytosol	63.87	68.63
CDX93356	Canola	cytosol	63.87	68.63
CDY03404	Canola	cytosol	63.58	68.32
AT5G50580.2	Thale cress	cytosol	62.72	67.81
AT5G50680.1	Thale cress	cytosol	62.72	67.81
AT4G24940.1	Thale cress	cytosol	62.72	67.39
CDY08954	Canola	cytosol, mitochondrion	32.08	63.43
CDY08955	Canola	cytosol	18.79	61.32
TraesCS7A01G352700.2	Wheat	cytosol	58.09	61.09
Os11t0497000-01	Rice	cytosol	57.51	60.67
TraesCS7D01G370300.1	Wheat	cytosol	57.8	60.24
TraesCS3A01G090000.1	Wheat	cytosol	57.8	60.24
TraesCS3D01G090000.1	Wheat	cytosol	57.51	59.94
TraesCS3B01G105300.2	Wheat	cytosol	57.51	59.94
EES08513	Sorghum	cytosol	57.23	59.1
Zm00001d049163_P001	Maize	cytosol, extracellular	55.78	57.96
TraesCS7B01G275300.1	Wheat	cytosol	53.76	56.19
HORVU7Hr1G089410.1	Barley	cytosol, mitochondrion, nucleus	58.09	52.48
HORVU2Hr1G027820.1	Barley	cytosol	13.58	52.22
CDY08961	Canola	plastid	18.79	46.1
HORVU3Hr1G016010.1	Barley	cytosol, plastid	57.8	42.92
HORVU3Hr1G016090.4	Barley	peroxisome	30.06	41.11
Solyc12g005870.1.1	Tomato	cytosol	20.81	14.4
Solyc11g072460.1.1	Tomato	cytosol	21.68	13.97

Protein Annotations

MapMan:19.2.2.2.2.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008641
GO:GO:0009987	GO:GO:0016925	GO:GO:0019538	GO:GO:0019948	UniProt:K4BEU5	PFAM:PF00899
PANTHER:PTHR10953	PANTHER:PTHR10953:SF162	SUPFAM:SSF69572	EnsemblPlantsGene:Solyc03g019730.2	EnsemblPlants:Solyc03g019730.2.1	InterPro:ThiF_NAD_FAD-bd
UniParc:UPI0002768718	InterPro:Ubiquitin-activating_enz	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:61416754..61422688

Molecular Weight (calculated)

39062.0 Da

IEP (calculated)

7.548

GRAVY (calculated)

-0.227

Length

346 amino acids

Sequence
(BLAST)

001: MHKRKSRIHY SSAKFLQLFC HLRMGTEGEQ LTEQETAIYD RQIRVWGVDA QRRLSKSNVF VSGLRGTSVE FCKNIVLAGV GSLTLNDDRL VTEDLLFANF
101: LTPPAENDFR GKSVAELCCD SLKDFNPMVS VSVEKGALSI FDADFFQKFD VVVVNCCSLL TKKSVNAKCR KLPKRVAFYS VECRDSCGEI FVDLQNYSYC
201: KKKNEETIEC KLHYPSFEEA IAVPWRSLPK RMSKLYYAMR VIERFEELEG RNPGETSVDD LPNVQKLRKE LCEAHSLNES QIPDSLLRRL IASISEFPPV
301: CAIVGGILGQ EVIKAISGKG DPLKNFFFFD AMDGKGIIED ISNGKS

Best Arabidopsis Sequence Match ( AT5G50680.1 )
(BLAST)

001: MDGDELTEQE TALYDRQIRV WGAGAQRRLS KSHVLVSGIK GTVAEFCKNI VLAGVGSVTL LDDRLVTTEV FNANFLILPD ENAYVGKTVA EICCDSLKDF
101: NPMVHVSIEK GDLSTLGVDF FEKFDVVVIG YSSRATKKAV NEKCRNLAKD VAFYTVDCRG SCGEIFVDLQ NYKYTKKKLD ETVECELTFP SFEEAVSVPW
201: KPMPRRTAKL YFAMRVIELF EETEGRKPGE CSLSDLPRVL KLKKELCEGN SVSENHIPDI LLERLVSNNT EFPPACAIIG GILGQEVIKV ISGKGEPLKN
301: FFYFDAEDGK GVIEDLSHKL

Arabidopsis Description

SAE1B-2SUMO-activating enzyme subunit 1B-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DI12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.