Factsheet for Solyc12g005870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072460.1.1	Tomato	cytosol	88.8	82.68
VIT_12s0059g00610.t01	Wine grape	cytosol	82.2	78.59
KRH56132	Soybean	cytosol	77.0	73.61
KRH25373	Soybean	cytosol	76.2	72.85
Bra015396.1-P	Field mustard	nucleus	72.2	72.34
Bra032482.1-P	Field mustard	cytosol	66.2	69.25
Bra005592.1-P	Field mustard	cytosol	71.4	68.0
HORVU3Hr1G105710.1	Barley	cytosol, nucleus	9.6	66.67
GSMUA_Achr5P02360_001	Banana	cytosol	70.2	66.48
Bra020995.1-P	Field mustard	cytosol	15.6	65.55
AT3G25880.2	Thale cress	cytosol	9.4	63.51
Os03t0820100-01	Rice	cytosol	66.8	62.9
KXG37258	Sorghum	cytosol	66.4	62.76
Zm00001d034640_P003	Maize	cytosol, extracellular	66.2	62.57
Zm00001d012969_P008	Maize	cytosol	64.8	61.13
TraesCS5B01G489700.1	Wheat	cytosol	63.6	61.04
TraesCS5A01G318500.3	Wheat	cytosol	64.6	60.94
TraesCS5A01G476800.1	Wheat	cytosol	64.0	60.38
TraesCS5D01G490100.3	Wheat	plastid	63.8	58.96
TraesCS5B01G319000.2	Wheat	golgi	64.8	56.64
CDY49508	Canola	cytosol	35.8	55.94
TraesCS5D01G324800.3	Wheat	mitochondrion	64.6	55.69
HORVU5Hr1G081370.10	Barley	cytosol, nucleus, plastid	65.0	55.18
Solyc06g072080.2.1	Tomato	cytosol	15.0	23.58
Solyc03g019730.2.1	Tomato	mitochondrion	14.4	20.81

Protein Annotations

MapMan:19.2.2.3.3.2	Gene3D:3.40.50.720	InterPro:APP-BP1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008641	GO:GO:0009987	GO:GO:0019538	GO:GO:0019781	GO:GO:0045116
UniProt:K4DBC5	PFAM:PF00899	PIRSF:PIRSF039099	PANTHER:PTHR10953	PANTHER:PTHR10953:SF29	SUPFAM:SSF69572
EnsemblPlantsGene:Solyc12g005870.1	EnsemblPlants:Solyc12g005870.1.1	InterPro:ThiF_NAD_FAD-bd	UniParc:UPI000276A4A8	InterPro:Ubiquitin-activating_enz	:

Description

NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:K4DBC5]

Coordinates

chr12:+:500078..511106

Molecular Weight (calculated)

55627.3 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.248

Length

500 amino acids

Sequence
(BLAST)

001: MAEPKVKYDR QLRIWGEKGQ AALEKASICL LNCGPTGSET LKNLVLGGVG SITIVDGSKV EVGDLGNNFM VDESSVGQSK AECVCAFLQE LNDAVKAKFI
101: EEHPEELIET NPSFFSQFTL VIATQLVEDS MVKLDRICRE ANIILIFARS YGLMGLVRIS VKEHTVIESK PDHFLDDLRL NDPWPELRRF AETIDLNTTD
201: AVVHKHTPYI IILVKMAEEW TNMHGGKFPS TREEKKQFKD LIKSKMSTVD EENYKEAMEA SFKVFSPVGI GPNLQKIIND SCAEVDSNSS DFWVMVAAMK
301: EFIASEGGGE TPLEGSIPDM TSSTELYVNL QKTYQAKAEA DFLAMEQRVK NLLKKFSRDP ASISKANIKS FCRNARKLAV CRYRLVEDEF NSPAQPELQK
401: YLTDEDYGTA AGLYILLRAA DRFAANYNKF PGQFDGEMDE DISRLKTTAV GLLNDLGCNG SSVSEDLINE MCRYGASELH VVAAFVGGVT SQEVIKVSHH

Best Arabidopsis Sequence Match ( AT1G05180.1 )
(BLAST)

001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL

Arabidopsis Description

AXR1NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WFT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.