Factsheet for TraesCS5B01G489700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G182800.1
TraesCS5B01G180900.1
TraesCS5D01G187200.1
TraesCS6A01G016200.1
TraesCS6B01G023900.1
TraesCS6D01G019200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05180.1	TraesCS5A01G182800.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5B01G180900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5D01G187200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6A01G016200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6B01G023900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6D01G019200.1	AT4G36800.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G476800.1	Wheat	cytosol	97.5	95.85
HORVU3Hr1G105710.1	Barley	cytosol, nucleus	13.05	94.44
TraesCS5D01G490100.3	Wheat	plastid	97.5	93.9
KXG37258	Sorghum	cytosol	87.33	86.01
TraesCS5B01G319000.2	Wheat	golgi	94.05	85.66
Zm00001d034640_P003	Maize	cytosol, extracellular	86.95	85.63
Os03t0820100-01	Rice	cytosol	86.56	84.93
Zm00001d012969_P008	Maize	cytosol	86.18	84.72
GSMUA_Achr5P02360_001	Banana	cytosol	71.4	70.45
VIT_12s0059g00610.t01	Wine grape	cytosol	67.56	67.3
KRH56132	Soybean	cytosol	66.6	66.35
CDY46837	Canola	nucleus	66.22	65.97
CDY55450	Canola	cytosol	65.64	65.64
KRH25373	Soybean	cytosol	65.83	65.58
Bra015396.1-P	Field mustard	nucleus	62.76	65.53
CDY49510	Canola	cytosol	65.64	65.39
Bra032482.1-P	Field mustard	cytosol	59.88	65.27
CDY15536	Canola	cytosol	64.88	64.88
CDY06162	Canola	cytosol	64.11	64.73
PGSC0003DMT400070486	Potato	cytosol	66.6	64.62
CDY48269	Canola	cytosol	64.88	64.38
Bra005592.1-P	Field mustard	cytosol	64.68	64.19
Solyc11g072460.1.1	Tomato	cytosol	66.03	64.06
Solyc12g005870.1.1	Tomato	cytosol	61.04	63.6
CDY12209	Canola	cytosol	64.88	63.3
AT2G32410.1	Thale cress	nucleus	63.53	63.29
AT1G05180.1	Thale cress	cytosol	64.68	62.41
CDY10045	Canola	cytosol	56.43	61.25
CDX98913	Canola	cytosol	12.09	60.58
CDY31150	Canola	cytosol	12.09	60.58
Bra020995.1-P	Field mustard	cytosol	12.86	56.3
AT3G25880.2	Thale cress	cytosol	7.87	55.41
CDX81957	Canola	cytosol	11.71	53.98
CDY49508	Canola	cytosol	32.44	52.81
CDX97381	Canola	extracellular	18.23	44.39
TraesCS3B01G105300.2	Wheat	cytosol	14.97	23.49
TraesCS7B01G275300.1	Wheat	cytosol	13.63	21.45

Protein Annotations

MapMan:19.2.2.3.3.2	Gene3D:3.40.50.720	InterPro:APP-BP1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009987	GO:GO:0019538
GO:GO:0019781	GO:GO:0045116	PFAM:PF00899	PIRSF:PIRSF039099	PANTHER:PTHR10953	PANTHER:PTHR10953:SF29
SUPFAM:SSF69572	InterPro:ThiF_NAD_FAD-bd	EnsemblPlantsGene:TraesCS5B01G489700	EnsemblPlants:TraesCS5B01G489700.1	InterPro:Ubiquitin-activating_enz	TIGR:cd01493
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:659450751..659459900

Molecular Weight (calculated)

57750.1 Da

IEP (calculated)

5.288

GRAVY (calculated)

-0.108

Length

521 amino acids

Sequence
(BLAST)

001: EPKTKYDRQL RIWGDQGQAA LEKASICLLN CGPTGTEALK NLVLGGIGSV TVVDGSKVEP SDLGNNFLLD EGCLGHSRAK SICYFLQELN DAVKAKYVEE
101: SPATMIDTNP SFFSQFTVVI ATQLPESSLL KLDSICGSAN IVLVAARSYG LTGLVRVSIK EHCVIESKPD HFLDDLRLHN PWTELKQFAK SIDICDKDAV
201: VHKHTPYIVI LVRLAEKWAD AHDGQLPSTR QEKREFKDLI RAHMLNVDED NYKEAVESSY KVSVTPGISN EIRQIIDDSS SEVNFSSSDF WVLVSALKEF
301: ITNEGNGELP LEGTIPDMTS LTEYYVSLQK IYQAKAESDC LAMDHRVKSI LKRIGRDPES ISRAYIKTFC KNTRKLKVCR YRSMEEEFSS PVLSKVQKYF
401: ADEDSCYAMN FYVLLRAVDQ LAASYNRLPG IFDSEIVEDV PRLKAAAVSV LSDMGLKGAS LSEDLVAEVC RFAGAEIHPV AAFIGGVASQ DVIKLVTKQF
501: VPLNGTFIFN GIDLKSQVLA L

Best Arabidopsis Sequence Match ( AT1G05180.1 )
(BLAST)

001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL

Arabidopsis Description

AXR1NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WFT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.