Factsheet for TraesCS5B01G319000.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G182800.1
TraesCS5B01G180900.1
TraesCS5D01G187200.1
TraesCS6A01G016200.1
TraesCS6B01G023900.1
TraesCS6D01G019200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05180.1	TraesCS5A01G182800.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5B01G180900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5D01G187200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6A01G016200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6B01G023900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6D01G019200.1	AT4G36800.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G318500.3	Wheat	cytosol	90.73	97.92
TraesCS5B01G489700.1	Wheat	cytosol	85.66	94.05
TraesCS5D01G324800.3	Wheat	mitochondrion	91.96	90.69
HORVU5Hr1G081370.10	Barley	cytosol, nucleus, plastid	90.56	87.95
Os03t0820100-01	Rice	cytosol	81.47	87.76
KXG37258	Sorghum	cytosol	80.42	86.96
Zm00001d034640_P003	Maize	cytosol, extracellular	80.07	86.58
Zm00001d012969_P008	Maize	cytosol	79.02	85.28
GSMUA_Achr5P02360_001	Banana	cytosol	66.26	71.78
VIT_12s0059g00610.t01	Wine grape	cytosol	63.99	69.98
KRH56132	Soybean	cytosol	62.24	68.07
KRH25373	Soybean	cytosol	61.54	67.3
CDY46837	Canola	nucleus	61.36	67.11
Bra015396.1-P	Field mustard	nucleus	58.22	66.73
Bra032482.1-P	Field mustard	cytosol	55.59	66.53
CDY06162	Canola	cytosol	59.79	66.28
CDY55450	Canola	cytosol	60.31	66.22
CDY49510	Canola	cytosol	60.49	66.16
PGSC0003DMT400070486	Potato	cytosol	61.54	65.55
CDY15536	Canola	cytosol	59.62	65.45
AT2G32410.1	Thale cress	nucleus	59.44	65.01
Solyc11g072460.1.1	Tomato	cytosol	61.01	64.99
CDY48269	Canola	cytosol	59.62	64.95
Solyc12g005870.1.1	Tomato	cytosol	56.64	64.8
Bra005592.1-P	Field mustard	cytosol	59.44	64.76
AT1G05180.1	Thale cress	cytosol	60.49	64.07
CDY12209	Canola	cytosol	59.44	63.67
CDY10045	Canola	cytosol	52.45	62.5
CDY31150	Canola	cytosol	10.84	59.62
CDX98913	Canola	cytosol	10.84	59.62
AT3G25880.2	Thale cress	cytosol	7.52	58.11
Bra020995.1-P	Field mustard	cytosol	11.54	55.46
CDY49508	Canola	cytosol	30.24	54.06
CDX81957	Canola	cytosol	10.49	53.1
CDX97381	Canola	extracellular	16.78	44.86
TraesCS3B01G105300.2	Wheat	cytosol	13.81	23.8
TraesCS7B01G275300.1	Wheat	cytosol	12.76	22.05

Protein Annotations

MapMan:19.2.2.3.3.2	Gene3D:3.40.50.720	InterPro:APP-BP1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009987	GO:GO:0019538	GO:GO:0019781
GO:GO:0045116	PFAM:PF00899	PIRSF:PIRSF039099	PANTHER:PTHR10953	PANTHER:PTHR10953:SF29	SUPFAM:SSF69572
InterPro:ThiF_NAD_FAD-bd	EnsemblPlantsGene:TraesCS5B01G319000	EnsemblPlants:TraesCS5B01G319000.2	InterPro:Ubiquitin-activating_enz	TIGR:cd01493	SEG:seg

Description

No Description!

Coordinates

chr5B:-:503218569..503225711

Molecular Weight (calculated)

63059.4 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.145

Length

572 amino acids

Sequence
(BLAST)

001: MHARAGGKRL HHHLRIARAA SREGSRFPTR FHFRSSAAAT ASAAMAAAAV AEPKTKYDRQ LRIWGDQGQA ALEKASICLL NCGPTGTEAL KNLVLGGIGS
101: VTVVDGSKVE QSDLGNNFLL DEGCLGQSRA KSICSFLQEL NDAVKAKYVE ESPATMIDTN PSFFSQFTVV LATQLPESSL LKLDSICRSA NIVLVAARSY
201: GLTGVVRVSI KEHCVIESKP DHSLDDLRLH NPWPELKQFA KSIDICDKDP VVHKHTPYIV ILARLAEKWA DAHDGQLPST RQEKREFKDL IRAHMLNVDE
301: DNYKEAVESS YKVSVTPGIS DEIRQIIDDS SSEVNFSSSD FWVLVASLKE FIANEGNGEL PLEGTIPDMT SLTEYYVSLQ KIYQAKAESD CLAIEHRVKS
401: ILKRIGRDPD SISRACIKTF CKNTRKLKVC RYRSMEEEFS SPVLSEVKKY FADEDSCFAM NFYVLLRAVD RLAANYSRLP GIFDSEIGED VPRLKEAAVS
501: VLSDMGLKGS SLSEDLIAEV CRFAGAEIHP VAAFIGGVAS QEVIKLVTKQ FVPLNGTFIF NGIDLKSQVL AL

Best Arabidopsis Sequence Match ( AT1G05180.1 )
(BLAST)

001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL

Arabidopsis Description

AXR1NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WFT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.