Factsheet for GSMUA_Achr5P02360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P23180_001
GSMUA_Achr3P13610_001
GSMUA_Achr6P08850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05180.1	GSMUA_Achr2P23180_001	AT4G36800.1	12682009
AT1G05180.1	GSMUA_Achr3P13610_001	AT4G36800.1	12682009
AT1G05180.1	GSMUA_Achr6P08850_001	AT4G36800.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g00610.t01	Wine grape	cytosol	74.24	74.95
KXG37258	Sorghum	cytosol	72.73	72.59
Zm00001d034640_P003	Maize	cytosol, extracellular	71.97	71.83
Os03t0820100-01	Rice	cytosol	72.16	71.75
Zm00001d012969_P008	Maize	cytosol	71.78	71.51
TraesCS5A01G476800.1	Wheat	cytosol	71.78	71.51
TraesCS5B01G489700.1	Wheat	cytosol	70.45	71.4
TraesCS5A01G318500.3	Wheat	cytosol	71.59	71.32
KRH56132	Soybean	cytosol	70.64	71.32
KRH25373	Soybean	cytosol	70.45	71.13
Solyc12g005870.1.1	Tomato	cytosol	66.48	70.2
CDY46837	Canola	nucleus	69.51	70.17
TraesCS5D01G490100.3	Wheat	plastid	71.59	69.87
CDY55450	Canola	cytosol	68.75	69.67
CDY49510	Canola	cytosol	68.94	69.6
HORVU3Hr1G105710.1	Barley	cytosol, nucleus	9.47	69.44
CDY15536	Canola	cytosol	68.37	69.29
CDY48269	Canola	cytosol	68.75	69.14
Bra015396.1-P	Field mustard	nucleus	65.34	69.14
PGSC0003DMT400070486	Potato	cytosol	70.08	68.9
Bra005592.1-P	Field mustard	cytosol	68.37	68.76
Solyc11g072460.1.1	Tomato	cytosol	69.89	68.72
CDY06162	Canola	cytosol	67.05	68.6
Bra032482.1-P	Field mustard	cytosol	61.74	68.2
CDY12209	Canola	cytosol	68.94	68.16
AT2G32410.1	Thale cress	nucleus	66.86	67.5
TraesCS5B01G319000.2	Wheat	golgi	71.78	66.26
AT1G05180.1	Thale cress	cytosol	67.23	65.74
CDY10045	Canola	cytosol	59.47	65.42
TraesCS5D01G324800.3	Wheat	mitochondrion	71.59	65.17
HORVU5Hr1G081370.10	Barley	cytosol, nucleus, plastid	71.78	64.35
CDX98913	Canola	cytosol	12.12	61.54
CDY31150	Canola	cytosol	12.12	61.54
AT3G25880.2	Thale cress	cytosol	8.33	59.46
Bra020995.1-P	Field mustard	cytosol	13.07	57.98
CDY49508	Canola	cytosol	34.47	56.88
CDX81957	Canola	cytosol	12.12	56.64
CDX97381	Canola	extracellular	19.32	47.66
GSMUA_AchrUn_...	Banana	cytosol	14.2	23.22

Protein Annotations

MapMan:19.2.2.3.3.2	Gene3D:3.40.50.720	InterPro:APP-BP1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009987	GO:GO:0019538	GO:GO:0019781
GO:GO:0045116	EnsemblPlantsGene:GSMUA_Achr5G02360_001	EnsemblPlants:GSMUA_Achr5P02360_001	EnsemblPlants:GSMUA_Achr5T02360_001	UniProt:M0SV15	PFAM:PF00899
PIRSF:PIRSF039099	PANTHER:PTHR10953	PANTHER:PTHR10953:SF29	SUPFAM:SSF69572	InterPro:ThiF_NAD_FAD-bd	UniParc:UPI0002965550
InterPro:Ubiquitin-activating_enz	:	:	:	:	:

Description

NEDD8-activating enzyme E1 regulatory subunit [Source:GMGC_GENE;Acc:GSMUA_Achr5G02360_001]

Coordinates

chr5:-:1477625..1486718

Molecular Weight (calculated)

58979.2 Da

IEP (calculated)

4.950

GRAVY (calculated)

-0.106

Length

528 amino acids

Sequence
(BLAST)

001: MATVAAEMKK TKYDRQLRIW GEQGQTALEN ANICLLNCGP TGSEALKNLV LGGIGSITVV DGSKVEIHDL GNNFLLDEDK LGQPKAKCVC SFLLELNDAV
101: KAKFVEEAPE DLIENNPSFF AEFTLVIATQ LMETSLIKLD KICREANIML VIARSYGLTG MVRISMKEHT IIESKPDHFL DDLRLHNPWP ELIEFSKTID
201: LSVTDPVIHK HTPYVVILIN LAEKWAKEHD GCLPSTRQEK RDFKDFIKAH MLNMDEENYK EALEASFKVS ISRGISSDLL QIVNDSATEV DSKSSDFWVL
301: VAALKEFIEN EGDGEPPLEG SIPDMTSSTE CYVILQKIYQ AKAESDCLAM EQRVKNILKR VGRDPDAISK AYVKNFCKNA RKITICRYRH IEDEFTSPCL
401: PELQKCLNDE DYSYAVGFYI LLRAVDRFAA NCNRLPGIFD SGLNEEISRL KLIAVGILSE LGLNGPTLSE DLVTEMCRFG GAELHPVAAF IGGVASQEVI
501: KLVTKQFVPL KGTFMFNGID HKSQVLVL

Best Arabidopsis Sequence Match ( AT1G05180.1 )
(BLAST)

001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL

Arabidopsis Description

AXR1NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WFT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.