Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G055840.2 | |
| HORVU6Hr1G003170.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05180.1 | HORVU5Hr1G055840.2 | AT4G36800.1 | 12682009 |
| AT1G05180.1 | HORVU6Hr1G003170.2 | AT4G36800.1 | 12682009 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31150 | Canola | cytosol | 25.0 | 17.31 |
| CDX98913 | Canola | cytosol | 25.0 | 17.31 |
| CDX81957 | Canola | cytosol | 26.39 | 16.81 |
| Bra020995.1-P | Field mustard | cytosol | 26.39 | 15.97 |
| CDX97381 | Canola | extracellular | 43.06 | 14.49 |
| AT3G25880.2 | Thale cress | cytosol | 13.89 | 13.51 |
| TraesCS5B01G489700.1 | Wheat | cytosol | 94.44 | 13.05 |
| TraesCS5A01G476800.1 | Wheat | cytosol | 94.44 | 12.83 |
| Zm00001d034640_P003 | Maize | cytosol, extracellular | 91.67 | 12.48 |
| KXG37258 | Sorghum | cytosol | 90.28 | 12.29 |
| TraesCS5D01G490100.3 | Wheat | plastid | 91.67 | 12.2 |
| HORVU5Hr1G081370.10 | Barley | cytosol, nucleus, plastid | 98.61 | 12.05 |
| Zm00001d012969_P008 | Maize | cytosol | 86.11 | 11.7 |
| Os03t0820100-01 | Rice | cytosol | 86.11 | 11.68 |
| Bra032482.1-P | Field mustard | cytosol | 70.83 | 10.67 |
| Bra015396.1-P | Field mustard | nucleus | 73.61 | 10.62 |
| KRH56132 | Soybean | cytosol | 76.39 | 10.52 |
| KRH25373 | Soybean | cytosol | 76.39 | 10.52 |
| CDY46837 | Canola | nucleus | 73.61 | 10.13 |
| CDY49510 | Canola | cytosol | 73.61 | 10.13 |
| CDY55450 | Canola | cytosol | 72.22 | 9.98 |
| CDY06162 | Canola | cytosol | 70.83 | 9.88 |
| CDY15536 | Canola | cytosol | 70.83 | 9.79 |
| Solyc12g005870.1.1 | Tomato | cytosol | 66.67 | 9.6 |
| AT2G32410.1 | Thale cress | nucleus | 69.44 | 9.56 |
| GSMUA_Achr5P02360_001 | Banana | cytosol | 69.44 | 9.47 |
| AT1G05180.1 | Thale cress | cytosol | 69.44 | 9.26 |
| VIT_12s0059g00610.t01 | Wine grape | cytosol | 66.67 | 9.18 |
| Bra005592.1-P | Field mustard | cytosol | 66.67 | 9.14 |
| CDY48269 | Canola | cytosol | 66.67 | 9.14 |
| HORVU3Hr1G016090.4 | Barley | peroxisome | 31.94 | 9.09 |
| Solyc11g072460.1.1 | Tomato | cytosol | 66.67 | 8.94 |
| CDY12209 | Canola | cytosol | 65.28 | 8.8 |
| PGSC0003DMT400070486 | Potato | cytosol | 65.28 | 8.75 |
| CDY10045 | Canola | cytosol | 50.0 | 7.5 |
| HORVU7Hr1G089410.1 | Barley | cytosol, mitochondrion, nucleus | 30.56 | 5.74 |
| HORVU3Hr1G016010.1 | Barley | cytosol, plastid | 31.94 | 4.94 |
| CDY49508 | Canola | cytosol | 13.89 | 3.12 |
| HORVU2Hr1G027820.1 | Barley | cytosol | 1.39 | 1.11 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G105710.1 | EnsemblPlantsGene:HORVU3Hr1G105710 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008641 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019781 |
| GO:GO:0045116 | InterPro:APP-BP1 | InterPro:ThiF_NAD_FAD-bd | InterPro:Ubiquitin-activating_enz | PANTHER:PTHR10953 | PANTHER:PTHR10953:SF29 |
| PFAM:PF00899 | SUPFAM:SSF69572 | UniParc:UPI000B48881F | UniProt:A0A287MJI6 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr3H:-:669491292..669491603
Molecular Weight (calculated)
7736.0 Da
IEP (calculated)
4.046
GRAVY (calculated)
-0.154
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: GLGSVTVVDG SKVEQSDLGN NFLLDEGCLG QSRAKSICSF LQELNDAVKA KYVEESPATM IDTNPSFFSQ FT
001: MAEPKTKYDR QLRIWGELGQ SALETASICL LNCGPTGSEA LKNLVIGGIG SITIVDGSKV EIGDLGNNFM VDAKSVGQSR AKTVCGFLQE LNDSVKANFV
101: EENPDTLIST DPSFFSQFTL VIATQLVEDS MVKLDRICRE ANVMLVLARS YGLTGFVRIS VKEHTAIETK PDHSLDDLRL NSPWPELKSY VESIDLNVEE
201: PAAHKHIPYV VILVKVAEEW AQHHSGNLPS TREEKNEFKD LVKSKMVSAD EENYKEALLA AFKVFAPTGI SQEIQDINHD SCAEVGSNSS DFWVMVAALK
301: EFISNEGGGE VPLEGSMPDM ISSTEHYINL QKIYHSKAEA DFLSMEQRVK SILVKVGQDP SSISKPTIKS FCKNARKLKV CRYRTIEDEF KSPSTTELHK
401: YLADENYR
101: EENPDTLIST DPSFFSQFTL VIATQLVEDS MVKLDRICRE ANVMLVLARS YGLTGFVRIS VKEHTAIETK PDHSLDDLRL NSPWPELKSY VESIDLNVEE
201: PAAHKHIPYV VILVKVAEEW AQHHSGNLPS TREEKNEFKD LVKSKMVSAD EENYKEALLA AFKVFAPTGI SQEIQDINHD SCAEVGSNSS DFWVMVAALK
301: EFISNEGGGE VPLEGSMPDM ISSTEHYINL QKIYHSKAEA DFLSMEQRVK SILVKVGQDP SSISKPTIKS FCKNARKLKV CRYRTIEDEF KSPSTTELHK
401: YLADENYR
Arabidopsis Description
AXL1NEDD8-activating enzyme E1 regulatory subunit AXL [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.