Factsheet for TraesCS5D01G490100.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G182800.1
TraesCS5B01G180900.1
TraesCS5D01G187200.1
TraesCS6A01G016200.1
TraesCS6B01G023900.1
TraesCS6D01G019200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05180.1	TraesCS5A01G182800.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5B01G180900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS5D01G187200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6A01G016200.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6B01G023900.1	AT4G36800.1	12682009
AT1G05180.1	TraesCS6D01G019200.1	AT4G36800.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G489700.1	Wheat	cytosol	93.9	97.5
TraesCS5A01G476800.1	Wheat	cytosol	95.01	96.98
HORVU3Hr1G105710.1	Barley	cytosol, nucleus	12.2	91.67
KXG37258	Sorghum	cytosol	85.21	87.15
Zm00001d034640_P003	Maize	cytosol, extracellular	84.84	86.77
Zm00001d012969_P008	Maize	cytosol	84.29	86.04
TraesCS5D01G324800.3	Wheat	mitochondrion	91.87	85.69
Os03t0820100-01	Rice	cytosol	83.73	85.31
GSMUA_Achr5P02360_001	Banana	cytosol	69.87	71.59
VIT_12s0059g00610.t01	Wine grape	cytosol	65.06	67.3
KRH56132	Soybean	cytosol	64.33	66.54
CDY46837	Canola	nucleus	63.96	66.16
KRH25373	Soybean	cytosol	63.59	65.77
Bra015396.1-P	Field mustard	nucleus	60.63	65.73
Bra032482.1-P	Field mustard	cytosol	58.04	65.69
CDY55450	Canola	cytosol	63.22	65.64
CDY49510	Canola	cytosol	63.4	65.58
CDY06162	Canola	cytosol	62.11	65.12
CDY15536	Canola	cytosol	62.48	64.88
CDY48269	Canola	cytosol	62.66	64.57
PGSC0003DMT400070486	Potato	cytosol	63.96	64.43
Bra005592.1-P	Field mustard	cytosol	62.48	64.38
Solyc11g072460.1.1	Tomato	cytosol	63.4	63.87
Solyc12g005870.1.1	Tomato	cytosol	58.96	63.8
AT2G32410.1	Thale cress	nucleus	61.55	63.67
CDY12209	Canola	cytosol	62.48	63.3
AT1G05180.1	Thale cress	cytosol	62.48	62.59
CDY10045	Canola	cytosol	54.16	61.04
CDX98913	Canola	cytosol	11.28	58.65
CDY31150	Canola	cytosol	11.28	58.65
Bra020995.1-P	Field mustard	cytosol	12.01	54.62
AT3G25880.2	Thale cress	cytosol	7.39	54.05
CDY49508	Canola	cytosol	31.61	53.44
CDX81957	Canola	cytosol	10.91	52.21
CDX97381	Canola	extracellular	17.56	44.39
TraesCS3D01G090000.1	Wheat	cytosol	15.16	24.7
TraesCS7D01G370300.1	Wheat	cytosol	14.97	24.4

Protein Annotations

MapMan:19.2.2.3.3.2	Gene3D:3.40.50.720	InterPro:APP-BP1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009987	GO:GO:0019538	GO:GO:0019781
GO:GO:0045116	PFAM:PF00899	PIRSF:PIRSF039099	PANTHER:PTHR10953	PANTHER:PTHR10953:SF29	SUPFAM:SSF69572
InterPro:ThiF_NAD_FAD-bd	EnsemblPlantsGene:TraesCS5D01G490100	EnsemblPlants:TraesCS5D01G490100.3	InterPro:Ubiquitin-activating_enz	TIGR:cd01493	SEG:seg

Description

No Description!

Coordinates

chr5D:+:525069718..525081978

Molecular Weight (calculated)

59453.0 Da

IEP (calculated)

5.048

GRAVY (calculated)

-0.062

Length

541 amino acids

Sequence
(BLAST)

001: MAAAPSASAS AVAVAEPKTK YDRQLRIWGD QGQAALEKAS ICLLNCGPTG TEALKNLVLG GIGSVTVVDD SKVEPSDLGN NFLLDEGCLG HSRAKSICSF
101: LQELNDAVKA KYVEESVATM IDTNPSFFSE FTVVIATQLP ESSLLKLDGI CGSANIVLVA ARSYGLTGLV RVSIKEHCVI ESKPDHFLDD LRLHNPWTEL
201: KQFAKSIDIC DKDAVVHKHT PYIVILVRLA EKWADAHDGQ LPSTRQEKRE FKDLIRAHML NVDEDNYKEA VESSYKVSLT PGISNEIRQI IDDSSSEVNF
301: SSSDFWVLVS ALKEFITNEG NGELPLEGTI PDMTSLTEYY VSLQKIYQAK AESDCLAMEH RVKSILKRIG RDPESISRAY IKTFCKNTRK LKVCRYRSME
401: EEFSSPALSE VQKYFADEDS CYAMNFYVLL RAVDRLAASY SRLPGIFDSI GSTSEIVEDV PRLKAAAVSV LSDMGLKGAS LSEDLVTEVC RFAGAEIHPV
501: AAFIGGVASQ EVIKLVTKQF VPLNGTFIFN GIDLKSQVLA L

Best Arabidopsis Sequence Match ( AT1G05180.1 )
(BLAST)

001: MQAVKRSRRH VEEEPTMVEP KTKYDRQLRI WGEVGQAALE EASICLLNCG PTGSEALKNL VLGGVGSITV VDGSKVQFGD LGNNFMVDAK SVGQSKAKSV
101: CAFLQELNDS VNAKFIEENP DTLITTNPSF FSQFTLVIAT QLVEDSMLKL DRICRDANVK LVLVRSYGLA GFVRISVKEH PIIDSKPDHF LDDLRLNNPW
201: PELKSFVETI DLNVSEPAAA HKHIPYVVIL VKMAEEWAQS HSGNLPSTRE EKKEFKDLVK SKMVSTDEDN YKEAIEAAFK VFAPRGISSE VQKLINDSCA
301: EVNSNSSAFW VMVAALKEFV LNEGGGEAPL EGSIPDMTSS TEHYINLQKI YLAKAEADFL VIEERVKNIL KKIGRDPSSI PKPTIKSFCK NARKLKLCRY
401: RMVEDEFRNP SVTEIQKYLA DEDYSGAMGF YILLRAADRF AANYNKFPGQ FDGGMDEDIS RLKTTALSLL TDLGCNGSVL PDDLIHEMCR FGASEIHVVS
501: AFVGGIASQE VIKLVTKQFV PMLGTYIFNG IDHKSQLLKL

Arabidopsis Description

AXR1NEDD8-activating enzyme E1 regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WFT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.