Factsheet for TraesCS5B01G180900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G091300.1
TraesCS1B01G119100.1
TraesCS1D01G099900.1
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1
TraesCS5A01G318500.3
TraesCS5A01G476800.1
TraesCS5B01G319000.2
TraesCS5B01G489700.1
TraesCS5D01G324800.3
TraesCS5D01G490100.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	TraesCS5A01G318500.3	AT1G05180.1	12682009
AT4G36800.1	TraesCS5A01G476800.1	AT1G05180.1	12682009
AT4G36800.1	TraesCS5B01G319000.2	AT1G05180.1	12682009
AT4G36800.1	TraesCS5B01G489700.1	AT1G05180.1	12682009
AT4G36800.1	TraesCS5D01G324800.3	AT1G05180.1	12682009
AT4G36800.1	TraesCS5D01G490100.3	AT1G05180.1	12682009
AT4G36800.1	TraesCS1A01G091300.1	AT3G62980.1	12682009
AT4G36800.1	TraesCS1B01G119100.1	AT3G62980.1	12682009
AT4G36800.1	TraesCS1D01G099900.1	AT3G62980.1	12682009
AT4G36800.1	TraesCS3A01G457400.1	AT4G02570.1	12682009
AT4G36800.1	TraesCS3B01G497300.1	AT4G02570.1	12682009
AT4G36800.1	TraesCS3D01G450200.1	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G187200.1	Wheat	cytosol	98.91	98.91
TraesCS5A01G182800.1	Wheat	cytosol	98.91	98.91
HORVU5Hr1G055840.2	Barley	cytosol	98.91	98.91
TraesCS6B01G023900.1	Wheat	cytosol	96.72	96.72
Os09t0321900-01	Rice	plastid	85.79	85.79
EES13692	Sorghum	cytosol	81.42	81.42
GSMUA_Achr3P13610_001	Banana	cytosol	79.23	79.23
GSMUA_Achr6P08850_001	Banana	cytosol	79.23	79.23
Solyc04g079970.2.1	Tomato	cytosol	75.96	75.96
Solyc12g089030.1.1	Tomato	cytosol	74.32	74.32
Bra038542.1-P	Field mustard	cytosol	73.77	73.37
PGSC0003DMT400039878	Potato	cytosol	73.22	73.22
KRH76867	Soybean	cytosol	73.22	73.22
KRH28611	Soybean	cytosol	73.22	73.22
VIT_04s0023g01280.t01	Wine grape	cytosol	72.68	72.68
AT4G36800.1	Thale cress	cytosol	72.13	71.74
Bra010575.1-P	Field mustard	cytosol	71.58	70.81
Bra014836.1-P	Field mustard	cytosol	72.13	70.59
Bra011708.1-P	Field mustard	cytosol	71.04	70.27
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	70.49	69.73
Bra017784.1-P	Field mustard	cytosol	71.04	69.52
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	29.51	67.5
VIT_03s0063g02110.t01	Wine grape	golgi	75.96	64.65
Bra036361.1-P	Field mustard	cytosol	69.95	64.65
VIT_18s0001g12010.t01	Wine grape	cytosol	66.67	61.93
GSMUA_Achr2P23180_001	Banana	cytosol	81.42	60.57
CDY30311	Canola	mitochondrion	73.77	58.19
PGSC0003DMT400071582	Potato	cytosol	66.12	54.5
Solyc02g085690.2.1	Tomato	extracellular, vacuole	66.12	53.54
CDY51497	Canola	nucleus	73.22	51.94
Solyc06g007500.1.1	Tomato	cytosol	57.38	40.08
PGSC0003DMT400032948	Potato	cytosol	66.12	38.66
PGSC0003DMT400053003	Potato	cytosol	33.33	33.33

Protein Annotations

EnsemblPlants:TraesCS5B01G180900.1	EnsemblPlantsGene:TraesCS5B01G180900	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR43953	PANTHER:PTHR43953:SF3	PFAM:PF00179	PFscan:PS50127
ScanProsite:PS00183	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:19.2.2.3.4	:

Description

No Description!

Coordinates

chr5B:-:328371599..328374703

Molecular Weight (calculated)

20612.6 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.637

Length

183 amino acids

Sequence
(BLAST)

001: MINLFKIKGQ KNEEAANSKG GPPVKKQSPG ELRLHKDIAE LNLPKTTKIS FPNGKDDLMN FEATLRPDEG YYVGGAFTFT FQVSPSYPHE APKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTII YGLNLLFSQP NDEDPLNHEA AAVLRDNPQK FQRNVQTAMS GGYVNNTHFP RCK

Best Arabidopsis Sequence Match ( AT2G18600.1 )
(BLAST)

001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM

Arabidopsis Description

RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.