Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010575.1-P | Field mustard | cytosol | 98.37 | 97.84 |
| Bra011708.1-P | Field mustard | cytosol | 97.28 | 96.76 |
| Bra014836.1-P | Field mustard | cytosol | 96.74 | 95.19 |
| Bra017784.1-P | Field mustard | cytosol | 95.65 | 94.12 |
| KRH76867 | Soybean | cytosol | 86.96 | 87.43 |
| KRH28611 | Soybean | cytosol | 86.96 | 87.43 |
| Bra036361.1-P | Field mustard | cytosol | 92.93 | 86.36 |
| Solyc04g079970.2.1 | Tomato | cytosol | 83.15 | 83.61 |
| PGSC0003DMT400039878 | Potato | cytosol | 82.07 | 82.51 |
| Solyc12g089030.1.1 | Tomato | cytosol | 82.07 | 82.51 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 81.52 | 81.97 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 78.26 | 78.69 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 78.26 | 78.26 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 77.17 | 76.76 |
| EER88903 | Sorghum | cytosol | 76.09 | 76.5 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 75.54 | 75.96 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 85.87 | 73.49 |
| TraesCS5A01G182800.1 | Wheat | cytosol | 72.28 | 72.68 |
| TraesCS5D01G187200.1 | Wheat | cytosol | 72.28 | 72.68 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 71.74 | 72.13 |
| TraesCS6D01G019200.1 | Wheat | cytosol | 71.74 | 72.13 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 71.74 | 72.13 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 71.74 | 72.13 |
| TraesCS5B01G180900.1 | Wheat | cytosol | 71.74 | 72.13 |
| Zm00001d036481_P001 | Maize | cytosol | 76.63 | 70.85 |
| HORVU6Hr1G003170.2 | Barley | mitochondrion | 71.74 | 70.21 |
| EES13692 | Sorghum | cytosol | 69.57 | 69.95 |
| Os09t0321900-01 | Rice | plastid | 65.76 | 66.12 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 79.89 | 59.76 |
| PGSC0003DMT400071582 | Potato | cytosol | 71.2 | 59.01 |
| Os08t0374100-01 | Rice | cytosol, nucleus | 71.2 | 56.47 |
| Zm00001d014671_P001 | Maize | nucleus | 66.3 | 25.85 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | EntrezGene:829833 | UniProt:A0A178UX02 | ProteinID:AEE86703.1 | ProteinID:AEE86704.1 |
| EMBL:AF202771 | EMBL:AK230295 | ArrayExpress:AT4G36800 | EnsemblPlantsGene:AT4G36800 | RefSeq:AT4G36800 | TAIR:AT4G36800 |
| RefSeq:AT4G36800-TAIR-G | EnsemblPlants:AT4G36800.1 | TAIR:AT4G36800.1 | EMBL:AY048210 | EMBL:AY097381 | ProteinID:CAB16820.1 |
| ProteinID:CAB80346.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016874 | GO:GO:0019538 | GO:GO:0019788 | GO:GO:0045116 | InterPro:IPR000608 | InterPro:IPR016135 |
| RefSeq:NP_001154289.1 | RefSeq:NP_568008.4 | ProteinID:OAO97624.1 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 | PANTHER:PTHR43953:SF4 | UniProt:Q9SDY5 |
| Symbol:RCE1 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI00000AB084 | : | : | : | : | : |
Description
RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
Coordinates
chr4:-:17340932..17343035
Molecular Weight (calculated)
20787.8 Da
IEP (calculated)
7.983
GRAVY (calculated)
-0.442
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.