Factsheet for Bra017784.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003518.1-P
Bra007720.1-P
Bra014378.1-P
Bra015396.1-P
Bra020995.1-P
Bra032482.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	Bra015396.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra020995.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra032482.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra003518.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra007720.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra014378.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra000874.1-P	AT4G02570.1	12682009
AT4G36800.1	Bra036257.1-P	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014836.1-P	Field mustard	cytosol	98.93	98.93
Bra010575.1-P	Field mustard	cytosol	95.72	96.76
Bra011708.1-P	Field mustard	cytosol	95.19	96.22
AT4G36800.1	Thale cress	cytosol	94.12	95.65
Bra036361.1-P	Field mustard	cytosol	95.19	89.9
KRH76867	Soybean	cytosol	84.49	86.34
KRH28611	Soybean	cytosol	84.49	86.34
Bra038542.1-P	Field mustard	cytosol	81.82	83.15
Solyc04g079970.2.1	Tomato	cytosol	79.14	80.87
PGSC0003DMT400039878	Potato	cytosol	78.61	80.33
VIT_04s0023g01280.t01	Wine grape	cytosol	78.61	80.33
Solyc12g089030.1.1	Tomato	cytosol	78.61	80.33
Os10t0190000-02	Rice	cytosol, nucleus	75.94	77.17
GSMUA_Achr6P08850_001	Banana	cytosol	74.87	76.5
EER88903	Sorghum	cytosol	73.26	74.86
GSMUA_Achr3P13610_001	Banana	cytosol	72.19	73.77
TraesCS5A01G182800.1	Wheat	cytosol	70.05	71.58
TraesCS5D01G187200.1	Wheat	cytosol	70.05	71.58
VIT_03s0063g02110.t01	Wine grape	golgi	81.82	71.16
TraesCS6B01G023900.1	Wheat	cytosol	69.52	71.04
TraesCS6A01G016200.1	Wheat	cytosol	69.52	71.04
TraesCS6D01G019200.1	Wheat	cytosol	69.52	71.04
HORVU5Hr1G055840.2	Barley	cytosol	69.52	71.04
TraesCS5B01G180900.1	Wheat	cytosol	69.52	71.04
Zm00001d036481_P001	Maize	cytosol	73.8	69.35
HORVU6Hr1G003170.2	Barley	mitochondrion	69.52	69.15
EES13692	Sorghum	cytosol	66.84	68.31
Os09t0321900-01	Rice	plastid	63.1	64.48
GSMUA_Achr2P23180_001	Banana	cytosol	76.47	58.13
PGSC0003DMT400071582	Potato	cytosol	67.91	57.21
Os08t0374100-01	Rice	cytosol, nucleus	70.05	56.47
Zm00001d014671_P001	Maize	nucleus	63.64	25.21

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra017784	EnsemblPlants:Bra017784.1	EnsemblPlants:Bra017784.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4DMP9	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953
PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002540C61	:	:	:	:	:

Description

AT4G36800 (E=3e-102) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase

Coordinates

chrA03:-:30453619..30454517

Molecular Weight (calculated)

20925.9 Da

IEP (calculated)

7.986

GRAVY (calculated)

-0.483

Length

187 amino acids

Sequence
(BLAST)

001: MLGLFKVKEK QREQAQNASR GGGGGASVKK QSAGELRLHK DISELNLPSS CTISFPNGKD DLMNFEVSIK PDDGSYHNGT FAFTFQVSPV YPHEAPKVKC
101: KTKVYHPNID LEGNVCLNIL REDWKPVLNI NTVIYGLFHL FTEPNSEDPL NHEAAQVLRD NPKLFETNVR RAMTGGYVGQ TFFPRCI

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.