Factsheet for Bra036257.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra001900.1-P
Bra003518.1-P
Bra003735.1-P
Bra005000.1-P
Bra007720.1-P
Bra008231.1-P
Bra009129.1-P
Bra009835.1-P
Bra010575.1-P
Bra011708.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra013776.1-P
Bra014159.1-P
Bra014378.1-P
Bra014519.1-P
Bra014836.1-P
Bra015801.1-P
Bra017044.1-P
Bra017045.1-P
Bra017339.1-P
Bra017784.1-P
Bra018756.1-P
Bra018757.1-P
Bra021702.1-P
Bra021730.1-P
Bra024815.1-P
Bra024867.1-P
Bra024868.1-P
Bra025177.1-P
Bra025795.1-P
Bra026586.1-P
Bra026645.1-P
Bra030690.1-P
Bra031582.1-P
Bra033246.1-P
Bra033886.1-P
Bra034254.1-P
Bra036266.1-P
Bra036353.1-P
Bra036361.1-P
Bra036542.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02570.1	Bra033246.1-P	AT1G01640.1	15659098
AT4G02570.1	Bra039504.1-P	AT1G10230.1	16412087
AT4G02570.1	Bra012213.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra012214.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra012216.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra025795.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra003735.1-P	AT1G75950.1	12839993
AT4G02570.1	Bra008231.1-P	AT1G75950.1	12839993
AT4G02570.1	Bra015801.1-P	AT1G75950.1	12839993
AT4G02570.1	Bra003735.1-P	AT1G75950.1	15659098
AT4G02570.1	Bra008231.1-P	AT1G75950.1	15659098
AT4G02570.1	Bra015801.1-P	AT1G75950.1	15659098
AT4G02570.1	Bra003735.1-P	AT1G75950.1	15749712
AT4G02570.1	Bra008231.1-P	AT1G75950.1	15749712
AT4G02570.1	Bra015801.1-P	AT1G75950.1	15749712
AT4G02570.1	Bra003735.1-P	AT1G75950.1	16412087
AT4G02570.1	Bra008231.1-P	AT1G75950.1	16412087
AT4G02570.1	Bra015801.1-P	AT1G75950.1	16412087
AT4G02570.1	Bra024867.1-P	AT2G01620.1	12795696
AT4G02570.1	Bra024868.1-P	AT2G01620.1	12795696
AT4G02570.1	Bra026645.1-P	AT2G01620.1	12795696
AT4G02570.1	Bra024815.1-P	AT2G02560.1	15208391
AT4G02570.1	Bra026586.1-P	AT2G02560.1	15208391
AT4G02570.1	Bra024815.1-P	AT2G02560.1	15208392
AT4G02570.1	Bra026586.1-P	AT2G02560.1	15208392
AT4G02570.1	Bra024815.1-P	AT2G02560.1	18550827
AT4G02570.1	Bra026586.1-P	AT2G02560.1	18550827
AT4G02570.1	Bra039504.1-P	AT2G03160.1	16412087
AT4G02570.1	Bra039504.1-P	AT2G03190.1	16412087
AT4G02570.1	Bra034254.1-P	AT2G25490.1	14675533
AT4G02570.1	Bra012213.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra012214.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra012216.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra025795.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra009129.1-P	AT2G31470.1	18835996
AT4G02570.1	Bra021702.1-P	AT2G31470.1	18835996
AT4G02570.1	Bra021730.1-P	AT2G31470.1	18835996
AT4G02570.1	Bra000156.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra005000.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra017044.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra017045.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra000156.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra005000.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra017044.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra017045.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra000156.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra005000.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra017044.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra017045.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra014519.1-P	AT3G21860.1	16412087
AT4G02570.1	Bra001900.1-P	AT3G23050.1	12839993
AT4G02570.1	Bra033886.1-P	AT3G23050.1	12839993
AT4G02570.1	Bra001900.1-P	AT3G23050.1	15208392
AT4G02570.1	Bra033886.1-P	AT3G23050.1	15208392
AT4G02570.1	Bra001900.1-P	AT3G23050.1	18550827
AT4G02570.1	Bra033886.1-P	AT3G23050.1	18550827
AT4G02570.1	Bra039504.1-P	AT3G25650.1	16412087
AT4G02570.1	Bra017339.1-P	AT3G26000.1	12795696
AT4G02570.1	Bra025177.1-P	AT3G26000.1	12795696
AT4G02570.1	Bra036353.1-P	AT3G26000.1	12795696
AT4G02570.1	Bra014159.1-P	AT3G60010.1	16412087
AT4G02570.1	Bra018756.1-P	AT3G60010.1	16412087
AT4G02570.1	Bra018757.1-P	AT3G60010.1	16412087
AT4G02570.1	Bra003518.1-P	AT3G62980.1	18550827
AT4G02570.1	Bra007720.1-P	AT3G62980.1	18550827
AT4G02570.1	Bra014378.1-P	AT3G62980.1	18550827
AT4G02570.1	Bra036266.1-P	AT4G02440.1	16412087
AT4G02570.1	Bra030690.1-P	AT4G05460.1	12795696
AT4G02570.1	Bra031582.1-P	AT4G05460.1	12795696
AT4G02570.1	Bra013776.1-P	AT4G24210.1	15161962
AT4G02570.1	Bra010575.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra011708.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra014836.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra017784.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra036361.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra009835.1-P	AT5G25350.1	14675533
AT4G02570.1	Bra036542.1-P	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22060	Canola	cytosol	74.64	99.73
CDY21896	Canola	cytosol	74.44	99.46
Bra000874.1-P	Field mustard	cytosol	73.02	97.56
AT4G02570.1	Thale cress	cytosol	71.5	95.53
KRG96405	Soybean	cytosol	60.24	80.49
KRH68142	Soybean	cytosol	59.94	79.76
Bra034597.1-P	Field mustard	cytosol	52.94	71.41
Bra018706.1-P	Field mustard	cytosol	48.68	71.11
Bra032576.1-P	Field mustard	cytosol	52.03	69.51
Bra028442.1-P	Field mustard	cytosol	49.39	69.27
Bra033362.1-P	Field mustard	cytosol	49.29	67.88
GSMUA_Achr9P17620_001	Banana	cytosol	46.75	62.55
Bra033363.1-P	Field mustard	cytosol	48.78	61.83
Bra032570.1-P	Field mustard	cytosol	35.5	50.29
Solyc01g099290.2.1	Tomato	cytosol	10.65	39.47
PGSC0003DMT400063662	Potato	cytosol	11.05	37.59
Bra016291.1-P	Field mustard	cytosol	24.34	32.79
Bra024680.1-P	Field mustard	cytosol	24.14	32.51
Os05t0193900-00	Rice	cytosol	12.98	31.76
EES04173	Sorghum	cytosol	9.13	31.47
Bra025031.1-P	Field mustard	cytosol	23.94	31.05
Zm00001d042193_P001	Maize	cytosol	9.03	30.48
Bra022023.1-P	Field mustard	plastid	24.14	30.32
HORVU3Hr1G098530.4	Barley	cytosol	9.23	30.23
Bra017569.1-P	Field mustard	plastid	23.94	30.03
TraesCS3B01G497300.1	Wheat	cytosol	9.13	30.0
Os01t0935300-02	Rice	cytosol	9.03	29.67
TraesCS3A01G457400.1	Wheat	cytosol	8.92	29.33
TraesCS3D01G450200.1	Wheat	cytosol	8.92	29.33

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.1590	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	MapMan:2.4.1.1.2
Gene3D:3.40.30.10	EnsemblPlantsGene:Bra036257	EnsemblPlants:Bra036257.1	EnsemblPlants:Bra036257.1-P	InterPro:Cullin_N	InterPro:Cullin_homology
InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016491	GO:GO:0019538	GO:GO:0031625	GO:GO:0055114	InterPro:IPR016158	InterPro:IPR036388
UniProt:M4F5A1	InterPro:NuoE-like	PFAM:PF00888	PFAM:PF01257	PFAM:PF10557	ScanProsite:PS01099
PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785
SUPFAM:SSF52833	SUPFAM:SSF74788	SUPFAM:SSF75632	TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf	UniParc:UPI0002541F22
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding

Coordinates

chrA09:-:135699..142296

Molecular Weight (calculated)

113812.0 Da

IEP (calculated)

7.330

GRAVY (calculated)

-0.457

Length

986 amino acids

Sequence
(BLAST)

001: MERKTIDLDQ GWDYMQTGIT KLKRILEGLP EPQFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYIHSTVLP ALREKHDEYM LRELVKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKD AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLLDS
201: ASYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVYA NQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKIVKGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNHAANT ASVQEQVLIR KVIELHDKYM VYVVECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFEE YLGNNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPAEMVK CVEVFKGFYE TKTKHRKLTW IYSLGTCHLN GKFDTKPIEL VVSTYQAAVL LLFNTTDKLS YTDILTQLNL
601: SHEDLVRLLH SLSCARYKIL LKEPSTKTVS QSDSFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRLAAKR LLEIRQVFRQ PPSQASRSFS TALNYHLDSP DNKPDLPWEF SEANKSKVKE ILSYYPSNYK
801: QSAVIPLLDL AQQQHGGWLP VSAMNAVAKV IEVAPIRVYE VATFYSMFNR AKVGKYHLLV CGTTPCMIRG SRDIESALLD HLGVKRGEVT KDGLFSVGEM
901: ECMGCCVNAP MITVADYSNG SEGYTYNYFE DVTPEKVVEI VEKLRKGEKP PHGTQNPKRI KCGPEGGNKT LLGEPKPPQF RDLDAC

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.