Factsheet for Bra033363.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89925	Canola	cytosol	93.7	100.0
Bra033362.1-P	Field mustard	cytosol	72.24	78.49
PGSC0003DMT400013645	Potato	cytosol	6.94	69.23
Bra034597.1-P	Field mustard	cytosol	64.52	68.67
Bra032576.1-P	Field mustard	cytosol	63.37	66.8
Bra000874.1-P	Field mustard	cytosol	62.08	65.45
AT1G43140.1	Thale cress	cytosol	58.23	62.83
AT1G02980.1	Thale cress	cytosol	58.48	61.32
Bra018706.1-P	Field mustard	cytosol	46.66	53.78
Bra028442.1-P	Field mustard	cytosol	46.92	51.92
Bra032570.1-P	Field mustard	cytosol	46.4	51.87
Solyc06g008710.1.1	Tomato	cytosol	48.59	50.87
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	61.83	48.78
Bra024680.1-P	Field mustard	cytosol	29.82	31.69
Bra016291.1-P	Field mustard	cytosol	29.82	31.69
Bra025031.1-P	Field mustard	cytosol	28.79	29.47
Bra022023.1-P	Field mustard	plastid	29.05	28.79
Bra017569.1-P	Field mustard	plastid	28.79	28.5

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	EnsemblPlantsGene:Bra033363	EnsemblPlants:Bra033363.1
EnsemblPlants:Bra033363.1-P	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388
UniProt:M4EX28	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI0002544BDA
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT4G02570 (E=7e-264) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding

Coordinates

chrA10:-:4062589..4066064

Molecular Weight (calculated)

90349.1 Da

IEP (calculated)

7.173

GRAVY (calculated)

-0.398

Length

778 amino acids

Sequence
(BLAST)

001: MDHGDGSVVL LERHSVQAAR EGLITDAKDS PPSLLLSSQK MYRETIIDFE QGCKCLEAGV SELKRILEEE TTSETLIDPK QYLELYTTIY NMCIQKHPHD
101: YSQRLYNKYR DIVEHYAKKT VLPSIQQKHD EYLLRELSRR WGHYKVFVKW LSHFFNYLER FFISQRNQPP LLEVAMKSFR DRVYLEVQVS AKDVVIALIH
201: KEREGEQIDR ELLKNVLDVF VQSGMGTIER YKEDLEMFLL EETESYYARK ASSWIQECSC PEYMIKSEES LKKEKERVTH YLHSSTESKL VEIVQDILLV
301: SVEKHLLEKE HSGCSALLRD DKIDDLSRMY MLYHPIPKGL EPVADAFRVH VTREGNALIK QAQDAAANGS FVEAQLLVGK IIDLHEKYMV YVMGCFKNHA
401: FFHKALKEAF EVFCNKKVGG SYGPELLANF CDSLFKKSGN DKLSDEAMEA TIDNVIKLLD YISDKDIFAE FYRKKLARRL LFDHHKVNKE HETSMITKLK
501: RQQGGQYTSK MEGMVTDMQL AKEFQKGFKG SLTKKPGGID LAVTVLTTIH WPSYKKSTDL NLPREMVQCV EAFNSYYQSI TTARKLSWIY SLGTCHVIGS
601: FDPKPIELVL STYQAVVLCL FNDTERLTCQ EIIEQLNLSH EDLVRVLISL SCAKYRILNK EPASKSIATT DVFEFNSKFT DTMRRIKVSI PPPSMEEREK
701: VVEDVDRDRR YAIDACIVRI MKSRKVLPHQ QLVAQCAEQL SRMFKPDIKM IKKRIEDLMA RDYLERDAED HHIFKYVA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.