Factsheet for Bra018706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93643	Canola	cytosol	74.22	99.21
PGSC0003DMT400013645	Potato	cytosol	8.0	69.23
Bra000874.1-P	Field mustard	cytosol	71.41	65.31
Bra028442.1-P	Field mustard	cytosol	65.19	62.59
Bra034597.1-P	Field mustard	cytosol	57.04	52.67
Bra032576.1-P	Field mustard	cytosol	56.74	51.9
Bra033362.1-P	Field mustard	cytosol	54.96	51.82
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	71.11	48.68
Solyc06g008710.1.1	Tomato	cytosol	51.41	46.7
Bra033363.1-P	Field mustard	cytosol	53.78	46.66
Bra032570.1-P	Field mustard	cytosol	41.33	40.09
Bra016291.1-P	Field mustard	cytosol	30.67	28.28
Bra024680.1-P	Field mustard	cytosol	30.37	28.01
Bra025031.1-P	Field mustard	cytosol	31.26	27.76
Bra022023.1-P	Field mustard	plastid	31.26	26.88
Bra017569.1-P	Field mustard	plastid	30.81	26.46

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:35.1	EnsemblPlantsGene:Bra018706	EnsemblPlants:Bra018706.1
EnsemblPlants:Bra018706.1-P	InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain
InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M4DQB3
PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI000253ED69
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT1G43140 (E=4e-115) | ubiquitin protein ligase binding

Coordinates

chrA06:-:2435225..2437331

Molecular Weight (calculated)

79267.7 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.375

Length

675 amino acids

Sequence
(BLAST)

001: MEHKIIDFEQ GWEKIQIGIT ALKRKSECLH VPELLAQHTI DIYTIVYRMC TQKSPNDFSW PLYQKYCETM EEHMNSTVLP ALNEKRGDEY MLLRELVERW
101: SNHKTFVKSV SFLFLYLDRF FIVRRSLLSL EEVGLGCFRD LVYNKLQCKI REAVLALVDR EREGEDIDRK LMKQVLEFYV EIGEERYEED FESSMLKDTA
201: SYYSCKASSW IQEGSIDDYL LKFEECLKKE KERVTHYLHF SSEPNLVKVV EHEFFFVHEN QLLEKTHSEK QISFGSIAKI FKQHVTEEGG EDNKATNDQV
301: ASAKEQVLIR KVIELHEKYM VIECFQNHST LFYKALKRAF ERLCSKAVAG SDELLATFCD KIILKRWGSE ELSDEDIEKV VTFLAYISDE KYLFAEFYRK
401: KLTLRLLLNR GVSDDHERSI LTKLKQQHGG QFTYGENEIG LTVTLLTTGI WPSYKTFGIN LPSEMVKCVE VFKEFYEKKT KGRKLTWIHS LGTCHVNGLF
501: DQKPIELIVS THQAVVLLLF NTRDKLSYND IQTQLNVGHE DLVWLLHSLS CCKYKILTKE PATETVSRTD VFEFNSKFTA RMCRIKIPLR HVDDRKKFIE
601: NVDKDRRYAI DAAIVKIMKG RKALGHQQLV SECVGQLSRM FKPDIKAIKI RIDDLITRDY LERDMENPNM FRYLA

Best Arabidopsis Sequence Match ( AT1G43140.1 )
(BLAST)

001: MATILFKVIM MKELILLEEG WSVMKTGVAK LQRILEDLSE PPFDPGQYIN LYTIIYDMCL QQPPNDYSQE LYNKYRGVVD HYNKETVLPS MRERHGEYML
101: RELVKRWANH KILVRWLSRF CFYLDRFYVA RRGLPTLNDV GFTSFHDLVY QEIQSEAKDV LLALIHKERE GEQIDRTLVK NVIDVYCGNG VGQMVIYEED
201: FESFLLQDTA SYYSRKASRW SQEDSCPDYM LKAEECLKLE KERVTNYLHS TTEPKLVEKV QNELLVVVAK QLIENEHSGC LALLRDDKMG DLSRMYRLYR
301: LIPQGLEPIA DLFKQHVTAE GNALIKQAAD AATNQDASAS QVLVRKEIEL HDKYMVYVDE CFQKHSLFHK LLKEAFEVFC NKTVAGASSA EILATYCDNI
401: LKTRGGSEKL SDEATEITLE KVVNLLVYIS DKDLFAEFYR KKQARRLLFD RSGIMKEVTD ITLARELQTN FVDYLSANMT TKLGIDFTVT VLTTGFWPSY
501: KTTDLNLPTE MVNCVEAFKV FYGTKTNSRR LSWIYSLGTC HILGKFEKKT MELVVSTYQA AVLLLFNNAE RLSYTEISEQ LNLSHEDLVR LLHSLSCLKY
601: KILIKEPMSR TISKTDTFEF NSKFTDKMRK IRVPLPPMDE RKKVVEDVDK DRRYAIDAAL VRIMKSRKVL AHQQLVSECV EHLSKMFKPD IKMIKKRIED
701: LINRDYLERD TENANTFKYV A

Arabidopsis Description

Putative cullin-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P0CH31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.