Factsheet for Bra032576.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32488	Canola	cytosol	98.51	98.51
Bra034597.1-P	Field mustard	cytosol	85.77	86.59
CDY37452	Canola	cytosol	14.77	83.21
PGSC0003DMT400013645	Potato	cytosol	8.4	79.49
Bra033362.1-P	Field mustard	cytosol	68.43	70.53
Bra000874.1-P	Field mustard	cytosol	69.65	69.65
AT1G43140.1	Thale cress	cytosol	64.23	65.74
AT1G02980.1	Thale cress	cytosol	65.72	65.36
Bra033363.1-P	Field mustard	cytosol	66.8	63.37
Bra032570.1-P	Field mustard	cytosol	53.52	56.75
Bra018706.1-P	Field mustard	cytosol	51.9	56.74
Bra028442.1-P	Field mustard	cytosol	53.79	56.47
Solyc06g008710.1.1	Tomato	cytosol	54.2	53.84
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	69.51	52.03
Bra024680.1-P	Field mustard	cytosol	32.38	32.65
Bra016291.1-P	Field mustard	cytosol	32.25	32.51
Bra025031.1-P	Field mustard	cytosol	30.89	30.0
Bra022023.1-P	Field mustard	plastid	31.17	29.3
Bra017569.1-P	Field mustard	plastid	31.17	29.26

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	EnsemblPlantsGene:Bra032576	EnsemblPlants:Bra032576.1
EnsemblPlants:Bra032576.1-P	InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain
InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M4EUU4
PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI0002543077
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT4G02570 (E=6e-295) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding

Coordinates

chrA09:-:36689671..36692670

Molecular Weight (calculated)

85628.8 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.443

Length

738 amino acids

Sequence
(BLAST)

001: MSFSQNREPI TIEDGFKLID AAVTKLTRII EGKPEPPFLP EEYIGNYTIV YNMCIQKPPH DSSGPLYEKY GAILQAYDKL TILPSIMEKH DEYMLREVSR
101: WWEINKIMVR WLSHFFYYLD RYYIARNGIP SLTVVGMTCF RDHVYEKVHF NVKQVVIALI HKEREGQQID RALLKNVLDL FVQNGMGNME RYEKDFEDFF
201: LTETNSYYSR KASSWIQEDS CPEYMIKAEE SLKKEKERVS HYLHSDTEPK LVANVQTNLL VSVAKQLLEK ENSGCSALLR DDKTDDLSRM YRLYHAIPQG
301: LEPVAVAFRL HVTAEGNSLI KQAEDAATSG IVEEQVLVRK IIDLHDKYMA YVTDCFQNHT LFHKSLKEAF EIFCNKKVAG SSSAEMLATF CDNVFKKAAN
401: DKSNDDSTIE STIDNVVKLL DYISDKDLFA EFYRKKLARR LLFGKFSDDH ERSILTKLKG QFGGQFTSQM EGMGTDMQLG KDQQTGFEEY LKNANTGKPK
501: GVDFTVTVLT TGFWPSYKTS DLNLPLEMVN CIESFKAYYE IKTKHRRLMW IYSLGNCNLT ARFDAKPIEL IVSTYQAAVL CAFNHTERLT YQELIDQLNL
601: SHEDLVRVLH SLSCAKYKFL KKDPASKTIS KTDSFEFNSK FTDKMRRIKV PLPPVDDRKK VVEDVDKDRR YAIDASLVRI MKSRKVLPHQ QLVSECVEQL
701: SRMFKPDIKM IKKRIEDLIT RDYLERDTEN PNTFKYVA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.