Factsheet for Bra000874.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra001900.1-P
Bra003518.1-P
Bra003735.1-P
Bra005000.1-P
Bra007720.1-P
Bra008231.1-P
Bra009129.1-P
Bra009835.1-P
Bra010575.1-P
Bra011708.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra013776.1-P
Bra014159.1-P
Bra014378.1-P
Bra014519.1-P
Bra014836.1-P
Bra015801.1-P
Bra017044.1-P
Bra017045.1-P
Bra017339.1-P
Bra017784.1-P
Bra018756.1-P
Bra018757.1-P
Bra021702.1-P
Bra021730.1-P
Bra024815.1-P
Bra024867.1-P
Bra024868.1-P
Bra025177.1-P
Bra025795.1-P
Bra026586.1-P
Bra026645.1-P
Bra030690.1-P
Bra031582.1-P
Bra033246.1-P
Bra033886.1-P
Bra034254.1-P
Bra036266.1-P
Bra036353.1-P
Bra036361.1-P
Bra036542.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02570.1	Bra033246.1-P	AT1G01640.1	15659098
AT4G02570.1	Bra039504.1-P	AT1G10230.1	16412087
AT4G02570.1	Bra012213.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra012214.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra012216.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra025795.1-P	AT1G20140.1	16412087
AT4G02570.1	Bra003735.1-P	AT1G75950.1	12839993
AT4G02570.1	Bra008231.1-P	AT1G75950.1	12839993
AT4G02570.1	Bra015801.1-P	AT1G75950.1	12839993
AT4G02570.1	Bra003735.1-P	AT1G75950.1	15659098
AT4G02570.1	Bra008231.1-P	AT1G75950.1	15659098
AT4G02570.1	Bra015801.1-P	AT1G75950.1	15659098
AT4G02570.1	Bra003735.1-P	AT1G75950.1	15749712
AT4G02570.1	Bra008231.1-P	AT1G75950.1	15749712
AT4G02570.1	Bra015801.1-P	AT1G75950.1	15749712
AT4G02570.1	Bra003735.1-P	AT1G75950.1	16412087
AT4G02570.1	Bra008231.1-P	AT1G75950.1	16412087
AT4G02570.1	Bra015801.1-P	AT1G75950.1	16412087
AT4G02570.1	Bra024867.1-P	AT2G01620.1	12795696
AT4G02570.1	Bra024868.1-P	AT2G01620.1	12795696
AT4G02570.1	Bra026645.1-P	AT2G01620.1	12795696
AT4G02570.1	Bra024815.1-P	AT2G02560.1	15208391
AT4G02570.1	Bra026586.1-P	AT2G02560.1	15208391
AT4G02570.1	Bra024815.1-P	AT2G02560.1	15208392
AT4G02570.1	Bra026586.1-P	AT2G02560.1	15208392
AT4G02570.1	Bra024815.1-P	AT2G02560.1	18550827
AT4G02570.1	Bra026586.1-P	AT2G02560.1	18550827
AT4G02570.1	Bra039504.1-P	AT2G03160.1	16412087
AT4G02570.1	Bra039504.1-P	AT2G03190.1	16412087
AT4G02570.1	Bra034254.1-P	AT2G25490.1	14675533
AT4G02570.1	Bra012213.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra012214.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra012216.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra025795.1-P	AT2G25700.1	16412087
AT4G02570.1	Bra009129.1-P	AT2G31470.1	18835996
AT4G02570.1	Bra021702.1-P	AT2G31470.1	18835996
AT4G02570.1	Bra021730.1-P	AT2G31470.1	18835996
AT4G02570.1	Bra000156.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra005000.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra017044.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra017045.1-P	AT2G39940.1	12172031
AT4G02570.1	Bra000156.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra005000.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra017044.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra017045.1-P	AT2G39940.1	12445118
AT4G02570.1	Bra000156.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra005000.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra017044.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra017045.1-P	AT2G39940.1	12724535
AT4G02570.1	Bra014519.1-P	AT3G21860.1	16412087
AT4G02570.1	Bra001900.1-P	AT3G23050.1	12839993
AT4G02570.1	Bra033886.1-P	AT3G23050.1	12839993
AT4G02570.1	Bra001900.1-P	AT3G23050.1	15208392
AT4G02570.1	Bra033886.1-P	AT3G23050.1	15208392
AT4G02570.1	Bra001900.1-P	AT3G23050.1	18550827
AT4G02570.1	Bra033886.1-P	AT3G23050.1	18550827
AT4G02570.1	Bra039504.1-P	AT3G25650.1	16412087
AT4G02570.1	Bra017339.1-P	AT3G26000.1	12795696
AT4G02570.1	Bra025177.1-P	AT3G26000.1	12795696
AT4G02570.1	Bra036353.1-P	AT3G26000.1	12795696
AT4G02570.1	Bra014159.1-P	AT3G60010.1	16412087
AT4G02570.1	Bra018756.1-P	AT3G60010.1	16412087
AT4G02570.1	Bra018757.1-P	AT3G60010.1	16412087
AT4G02570.1	Bra003518.1-P	AT3G62980.1	18550827
AT4G02570.1	Bra007720.1-P	AT3G62980.1	18550827
AT4G02570.1	Bra014378.1-P	AT3G62980.1	18550827
AT4G02570.1	Bra036266.1-P	AT4G02440.1	16412087
AT4G02570.1	Bra030690.1-P	AT4G05460.1	12795696
AT4G02570.1	Bra031582.1-P	AT4G05460.1	12795696
AT4G02570.1	Bra013776.1-P	AT4G24210.1	15161962
AT4G02570.1	Bra010575.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra011708.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra014836.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra017784.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra036361.1-P	AT4G36800.1	12682009
AT4G02570.1	Bra009835.1-P	AT5G25350.1	14675533
AT4G02570.1	Bra036542.1-P	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90932	Canola	cytosol	99.86	99.86
AT4G02570.1	Thale cress	cytosol	95.12	95.12
KRG96405	Soybean	cytosol	80.62	80.62
KRH68142	Soybean	cytosol	79.95	79.62
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	97.56	73.02
Bra018706.1-P	Field mustard	cytosol	65.31	71.41
Bra034597.1-P	Field mustard	cytosol	70.6	71.27
Bra032576.1-P	Field mustard	cytosol	69.65	69.65
Bra028442.1-P	Field mustard	cytosol	65.72	68.99
Bra033362.1-P	Field mustard	cytosol	66.26	68.3
GSMUA_Achr9P17620_001	Banana	cytosol	62.87	62.96
Bra033363.1-P	Field mustard	cytosol	65.45	62.08
Bra032570.1-P	Field mustard	cytosol	47.83	50.72
Solyc01g099290.2.1	Tomato	cytosol	14.36	39.85
PGSC0003DMT400063662	Potato	cytosol	14.91	37.93
Bra016291.1-P	Field mustard	cytosol	32.79	33.06
Bra024680.1-P	Field mustard	cytosol	32.52	32.79
Os05t0193900-00	Rice	cytosol	17.48	32.01
EES04173	Sorghum	cytosol	12.33	31.82
Bra025031.1-P	Field mustard	cytosol	31.98	31.05
HORVU3Hr1G098530.4	Barley	cytosol	12.6	30.9
Zm00001d042193_P001	Maize	cytosol	12.2	30.82
TraesCS3B01G497300.1	Wheat	cytosol	12.47	30.67
Bra022023.1-P	Field mustard	plastid	32.25	30.32
Bra017569.1-P	Field mustard	plastid	31.98	30.03
Os01t0935300-02	Rice	cytosol	12.2	30.0
TraesCS3A01G457400.1	Wheat	cytosol	12.2	30.0
TraesCS3D01G450200.1	Wheat	cytosol	12.2	30.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	EnsemblPlantsGene:Bra000874	EnsemblPlants:Bra000874.1
EnsemblPlants:Bra000874.1-P	InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain
InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M4C9J5
PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI00025405A0
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding

Coordinates

chrA03:-:13631841..13635860

Molecular Weight (calculated)

86208.7 Da

IEP (calculated)

7.287

GRAVY (calculated)

-0.466

Length

738 amino acids

Sequence
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLP EPQFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALKEKHDEYM LRELVKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDRV YNELHSKVKD AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEV DFESFMLLDS
201: ASYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVYA NQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKIAKGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQAANT ASVQEQVLIR KVIELHDKYM VYVVECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQTSFEE YLGNNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMVK CVEVFKGFYE TKTKHRKLTW IYSLGTCHLN GKFDHKPIEL VVSTYQAAVL LLFNTTDKLS YNDILTQLNL
601: SHEDLVRLLH SLSCARYKIL VKEPSTKIVS QTDSFEFNAK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN ANMFRYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.