Factsheet for Bra036353.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra015801.1-P
Bra025795.1-P
Bra035002.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	Bra012213.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra012214.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra012216.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra025795.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra003735.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra008231.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra015801.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra039504.1-P	AT2G03170.1	12795696
AT3G26000.1	Bra012213.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra012214.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra012216.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra025795.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra035002.1-P	AT3G44260.1	21798944
AT3G26000.1	Bra000874.1-P	AT4G02570.1	12795696
AT3G26000.1	Bra036257.1-P	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40985	Canola	cytosol	98.22	98.22
Bra017339.1-P	Field mustard	cytosol	67.43	67.95
Bra025177.1-P	Field mustard	cytosol	70.99	64.73
AT3G26000.1	Thale cress	cytosol	66.41	57.62
KRH42623	Soybean	cytosol	51.15	44.57
KRH58731	Soybean	cytosol	51.15	43.41
VIT_01s0010g02380.t01	Wine grape	cytosol	49.62	40.62
PGSC0003DMT400041014	Potato	cytosol, plastid	45.55	37.29
Solyc04g024940.2.1	Tomato	cytosol, plastid	45.29	37.08
PGSC0003DMT400041013	Potato	cytosol, plastid	27.99	33.74
GSMUA_Achr3P02640_001	Banana	cytosol	33.84	33.0
Os04t0485800-01	Rice	cytosol, extracellular	35.11	30.46
Bra039085.1-P	Field mustard	cytosol	28.5	29.79
GSMUA_Achr2P20980_001	Banana	cytosol	35.88	29.75
Zm00001d003250_P001	Maize	cytosol	34.1	29.32
Bra024867.1-P	Field mustard	extracellular	17.05	29.0
EES12408	Sorghum	cytosol	33.59	28.88
Zm00001d025717_P001	Maize	cytosol	35.37	28.72
Bra024868.1-P	Field mustard	cytosol	20.1	27.43
TraesCS2B01G363000.1	Wheat	nucleus	32.57	24.43
Bra026645.1-P	Field mustard	cytosol	18.07	23.75
TraesCS2A01G320200.1	Wheat	nucleus	32.82	22.4
TraesCS2D01G343000.1	Wheat	nucleus	32.82	22.32
HORVU2Hr1G083980.2	Barley	nucleus	30.53	19.54

Protein Annotations

EnsemblPlants:Bra036353.1	EnsemblPlants:Bra036353.1-P	EnsemblPlantsGene:Bra036353	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44838	PANTHER:PTHR44838:SF2	PFAM:PF00646	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002545B8B
UniProt:M4F5J7	MapMan:35.1	:	:	:	:

Description

AT3G26000 (E=5e-105) | F-box family protein

Coordinates

chrA02:+:22840467..22841724

Molecular Weight (calculated)

43965.6 Da

IEP (calculated)

5.422

GRAVY (calculated)

-0.195

Length

393 amino acids

Sequence
(BLAST)

001: MALNFSHSHV SEKPMKITEG LSESHDGVFS ADIVDVLPSD PFGMDMNNTF TAITGWLEDL QADYRQCERD EIGDGDHQLF ARLSIIWNNA MRFQEFPESH
101: WSGSLFGFEG DGSCAGSFVS PTSVDKVMSR VGESSDGGEN ANVHPALGFC LYHLGVKDLL SVSMVCKSLH STVCDDSLLW KHIHISQPLN EKINDEALLR
201: LTERAHGTMQ CLRIVDCSKI TEDCLRKVLE RNPQVVKLGV PGCTRISIDG LVSILRDLKS AGKLKVKHLE TGGLYGVTKD HYDELLDLLD IDNNVNKTII
301: QKPRYYHRGY TFASCDDVVR ALDIEMCRKC ENWRIVYDCP AEDCKGKEEC RACSLCVQRC VQCGRCINGV YEETFCLEFL CSGCSKLLKL PLV

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.