CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96405
KRH22647
KRH25294
KRH26669
KRH30376
KRH68142

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	KRH22647	AT3G44260.1	21798944
AT3G26000.1	KRH25294	AT3G44260.1	21798944
AT3G26000.1	KRH26669	AT3G44260.1	21798944
AT3G26000.1	KRH30376	AT3G44260.1	21798944
AT3G26000.1	KRG96405	AT4G02570.1	12795696
AT3G26000.1	KRH68142	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58731	Soybean	cytosol	92.68	90.28
VIT_01s0010g02380.t01	Wine grape	cytosol	62.75	58.96
Bra017339.1-P	Field mustard	cytosol	47.01	54.36
CDY04188	Canola	cytosol	46.56	53.85
CDY39176	Canola	cytosol	46.56	53.3
CDX99734	Canola	cytosol	46.34	52.51
PGSC0003DMT400041014	Potato	cytosol, plastid	54.77	51.46
Bra036353.1-P	Field mustard	cytosol	44.57	51.15
CDX83577	Canola	cytosol	48.34	50.82
Bra025177.1-P	Field mustard	cytosol	48.56	50.81
CDY40985	Canola	cytosol	44.12	50.64
CDY13604	Canola	cytosol	48.12	50.35
Solyc04g024940.2.1	Tomato	cytosol, plastid	51.22	48.12
AT3G26000.1	Thale cress	cytosol	45.23	45.03
PGSC0003DMT400041013	Potato	cytosol, plastid	31.26	43.25
KRG94336	Soybean	cytosol	42.35	38.98
KRH57627	Soybean	cytosol	41.02	37.37
GSMUA_Achr3P02640_001	Banana	cytosol	33.26	37.22
GSMUA_Achr2P20980_001	Banana	cytosol	37.25	35.44
Os04t0485800-01	Rice	cytosol, extracellular	32.82	32.67
EES12408	Sorghum	cytosol	30.82	30.42
KRH41674	Soybean	cytosol, plasma membrane, plastid	19.07	30.28
Zm00001d003250_P001	Maize	cytosol	30.6	30.2
KRH60371	Soybean	cytosol, plasma membrane, plastid	21.06	30.06
Zm00001d025717_P001	Maize	cytosol	29.93	27.89
TraesCS2B01G363000.1	Wheat	nucleus	30.6	26.34
TraesCS2D01G343000.1	Wheat	nucleus	30.6	23.88
TraesCS2A01G320200.1	Wheat	nucleus	30.16	23.61
HORVU2Hr1G083980.2	Barley	nucleus	28.16	20.68

Protein Annotations

EMBL:ACUP02004822	EnsemblPlants:KRH42623	EnsemblPlantsGene:GLYMA_08G101200	EntrezGene:100807460	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR44838	PANTHER:PTHR44838:SF2	ProteinID:KRH42623	ProteinID:KRH42623.1
SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002337E36	UniProt:I1KRY5	MapMan:35.1

Description

hypothetical protein

Coordinates

chr8:+:7776730..7780535

Molecular Weight (calculated)

49511.5 Da

IEP (calculated)

5.298

GRAVY (calculated)

-0.276

Length

451 amino acids

Sequence
(BLAST)

001: MALNFSHRPI FSEDNLVSPM RMGIPEKSVV ENCFDYGRDR SGGGASHDDI LDLLPSDPFG MDISTTVTAI TGWLEDLEIV DYGGYRRDEL GASDGNYQLF
101: AGLNFIWNNA MRFHASCVEE KRGFGESCSV RNDGAAAASN NFGFGSVNNY DEVSGLPATS GSGDVVRRGG GGGGGDELAP HPALSFSLGY LGLSDLLVVE
201: RVCKSLHSTV RGDPLLWRSI HVDQPLNERI TDDVLLQLTN RAQGHLQCLS LVECTRITDD GLKRILEGNP KLTKLSVPGC TRLSIEGIVT ILKAYNSMDT
301: QGVKHLHIGG LYGVTQKHFE ELRFLLGADS PLLPHSHKSH YYRRGNLYLS CDDDQAIDIE VCPRCQNLRL VYDCPAESCQ GVEHTTQVCR ACTLCIPRCS
401: QCGRCINDSE YEETFCLELL CSSCSKQLVK CSERGDRKIG SDKSVVIHEQ N

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.