CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87806
EER98038
EES04173
EES09326
EES10179
EES11684
KXG20050
KXG22837
KXG38897
OQU76452
OQU76453
OQU76454
OQU83918
OQU83919

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	EER87806	AT3G44260.1	21798944
AT3G26000.1	EER98038	AT3G44260.1	21798944
AT3G26000.1	EES09326	AT3G44260.1	21798944
AT3G26000.1	EES10179	AT3G44260.1	21798944
AT3G26000.1	EES11684	AT3G44260.1	21798944
AT3G26000.1	KXG20050	AT3G44260.1	21798944
AT3G26000.1	KXG22837	AT3G44260.1	21798944
AT3G26000.1	KXG38897	AT3G44260.1	21798944
AT3G26000.1	OQU76452	AT3G44260.1	21798944
AT3G26000.1	OQU76453	AT3G44260.1	21798944
AT3G26000.1	OQU76454	AT3G44260.1	21798944
AT3G26000.1	OQU83918	AT3G44260.1	21798944
AT3G26000.1	OQU83919	AT3G44260.1	21798944
AT3G26000.1	EES04173	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003250_P001	Maize	cytosol	86.21	86.21
Zm00001d025717_P001	Maize	cytosol	78.56	74.17
Os04t0485800-01	Rice	cytosol, extracellular	53.17	53.64
TraesCS2B01G363000.1	Wheat	nucleus	47.7	41.6
TraesCS2D01G343000.1	Wheat	nucleus	47.92	37.89
TraesCS2A01G320200.1	Wheat	nucleus	47.7	37.85
Bra017339.1-P	Field mustard	cytosol	30.2	35.38
CDY04188	Canola	cytosol	29.76	34.87
CDY39176	Canola	cytosol	29.76	34.52
CDX99734	Canola	cytosol	29.32	33.67
Bra036353.1-P	Field mustard	cytosol	28.88	33.59
CDY40985	Canola	cytosol	28.67	33.33
CDY13604	Canola	cytosol	31.29	33.18
Bra025177.1-P	Field mustard	cytosol	30.85	32.71
CDX83577	Canola	cytosol	30.63	32.63
HORVU2Hr1G083980.2	Barley	nucleus	43.54	32.41
GSMUA_Achr3P02640_001	Banana	cytosol	27.35	31.02
KRH42623	Soybean	cytosol	30.42	30.82
AT3G26000.1	Thale cress	cytosol	29.98	30.24
VIT_01s0010g02380.t01	Wine grape	cytosol	31.73	30.21
GSMUA_Achr2P20980_001	Banana	cytosol	31.07	29.96
KRH58731	Soybean	cytosol	30.2	29.81
PGSC0003DMT400041014	Potato	cytosol, plastid	29.76	28.33
Solyc04g024940.2.1	Tomato	cytosol, plastid	29.32	27.92
PGSC0003DMT400041013	Potato	cytosol, plastid	19.26	26.99
EES13867	Sorghum	plastid	17.51	24.62

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:8073685	UniProt:C5YAX1	EnsemblPlants:EES12408	ProteinID:EES12408
ProteinID:EES12408.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF12937	PANTHER:PTHR44838	PANTHER:PTHR44838:SF1
EnsemblPlantsGene:SORBI_3006G126500	SUPFAM:SSF81383	unigene:Sbi.9907	UniParc:UPI0001A87175	RefSeq:XP_002448080.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:49175065..49178721

Molecular Weight (calculated)

49967.5 Da

IEP (calculated)

4.248

GRAVY (calculated)

-0.040

Length

457 amino acids

Sequence
(BLAST)

001: MALNCSSRSL LVTDDCAGMM LGCGCRSEEA SPLSSCGVNS LWWDELELEL EEEVESDPVD LLPTDPFGMN LETTFTAAIA SCIGDLTVMS GAGHFGSSDD
101: DDFYADLSYY LNQAFVLTPE PWSGAYTGVF EDSFVSGGLS GAGGMEQFSR LPPIASCSEP IGVTEDPSSS CDTALPCCDM VDVAPVQEGN DAHEAMVFVL
201: SYLGLRDILA VEMVCKSLRS AVRNEPFLWK CIHIDSHLGK KVSDADLLCL TQKSPGSVQC LSLMGCLSIT DQGLKAVLES NQQLTKLGIF GAFRITHQGL
301: IDNLRSFNMV ADIGLKKLRV TNRVTASEAQ YEELLSLMKI DKELALHKQE PRIFHADRLL PDLHGGYVPD SFVPDLHDEY ALDIEKCPLC PNYKLVYDCP
401: SKECKTSGAS TCRGCVVCIS RCLRCGRCID SEFQETFLLE NLCRDCVKYE DSPPTEK

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.