Factsheet for GSMUA_Achr2P20980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P19450_001
GSMUA_Achr6P19460_001
GSMUA_Achr8P18010_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P29700_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	GSMUA_Achr6P19450_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr6P19460_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr8P18010_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr9P29700_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_AchrUn_...	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr9P17620_001	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02640_001	Banana	cytosol	46.2	54.34
Bra017339.1-P	Field mustard	cytosol	32.49	39.49
CDY04188	Canola	cytosol	32.28	39.23
CDY39176	Canola	cytosol	32.49	39.09
KRH42623	Soybean	cytosol	35.44	37.25
KRH58731	Soybean	cytosol	36.29	37.15
VIT_01s0010g02380.t01	Wine grape	cytosol	37.55	37.08
CDX99734	Canola	cytosol	31.01	36.93
CDX83577	Canola	cytosol	33.12	36.6
PGSC0003DMT400041014	Potato	cytosol, plastid	36.92	36.46
CDY13604	Canola	cytosol	33.12	36.43
Bra025177.1-P	Field mustard	cytosol	33.12	36.43
CDY40985	Canola	cytosol	29.75	35.88
Bra036353.1-P	Field mustard	cytosol	29.75	35.88
Solyc04g024940.2.1	Tomato	cytosol, plastid	35.44	35.0
Os04t0485800-01	Rice	cytosol, extracellular	32.28	33.77
AT3G26000.1	Thale cress	cytosol	31.22	32.67
EES12408	Sorghum	cytosol	29.96	31.07
Zm00001d003250_P001	Maize	cytosol	29.75	30.85
PGSC0003DMT400041013	Potato	cytosol, plastid	20.89	30.37
Zm00001d025717_P001	Maize	cytosol	30.17	29.55
TraesCS2B01G363000.1	Wheat	nucleus	31.01	28.05
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	17.72	27.27
TraesCS2D01G343000.1	Wheat	nucleus	31.65	25.95
TraesCS2A01G320200.1	Wheat	nucleus	31.01	25.52
HORVU2Hr1G083980.2	Barley	nucleus	29.11	22.48

Protein Annotations

EnsemblPlants:GSMUA_Achr2P20980_001	EnsemblPlants:GSMUA_Achr2T20980_001	EnsemblPlantsGene:GSMUA_Achr2G20980_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44838	SEG:seg
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000294DB03	UniProt:M0S9T9	MapMan:35.1	:

Description

Putative F-box protein SKIP14 [Source:GMGC_GENE;Acc:GSMUA_Achr2G20980_001]

Coordinates

chr2:+:20658728..20664463

Molecular Weight (calculated)

52869.7 Da

IEP (calculated)

4.448

GRAVY (calculated)

-0.177

Length

474 amino acids

Sequence
(BLAST)

001: MPYELAFFVE SSASKSKMHT FFSSALLWLQ IKILSFDFDT QVGLNEKEFG CLGFVSMALN FSSCSVFSTP FVHTDDESSR SRCERSPLVS YWDTGSDYGY
101: VEGDSGSTDV EGAFDPVDLL PDDPFGMGLD DSMGVAIASL LEVSGSDFFG WTLLYSPETQ FYHDGWMEEC DGWDDGDFTG LSVREAGDEI LESGLDMGHS
201: LNCNRAEEAR SIIDDGTPHE GLLFSLGYLG VRDLLSVEGV CRSLRFAVQS DTLLWRCIHI DSPLSEKITD DVLLRLTQRA QGNLQCLSLT GCSRITDDGL
301: KRVLDNNPRL RKLSVPGCVR LSLDGIINSL KVLQSQGMPG IEHLKLGRLF IVSEEQYGEL KLLLGAEQLQ QAKHQKPRFY HTDRSSPTCD DDCIIDIELC
401: PLCQKYKLVY DCPSESCRGK GSKQCRACDV CIARCIQCGK CIKDCRYVET FCLEYLCSGC WKLPLVVHES NEEK

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.