Factsheet for VIT_01s0010g02380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g01090.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	VIT_06s0080g01090.t01	AT3G44260.1	21798944
AT3G26000.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42623	Soybean	cytosol	58.96	62.75
KRH58731	Soybean	cytosol	58.12	60.26
PGSC0003DMT400041014	Potato	cytosol, plastid	55.62	55.62
Bra017339.1-P	Field mustard	cytosol	44.17	54.36
CDY04188	Canola	cytosol	43.96	54.1
CDY39176	Canola	cytosol	43.96	53.55
CDX83577	Canola	cytosol	46.46	51.98
Bra025177.1-P	Field mustard	cytosol	46.67	51.97
CDY13604	Canola	cytosol	46.67	51.97
CDX99734	Canola	cytosol	42.92	51.76
Solyc04g024940.2.1	Tomato	cytosol, plastid	51.04	51.04
Bra036353.1-P	Field mustard	cytosol	40.62	49.62
CDY40985	Canola	cytosol	40.42	49.36
PGSC0003DMT400041013	Potato	cytosol, plastid	33.33	49.08
VIT_14s0171g00480.t01	Wine grape	cytosol	45.83	45.83
AT3G26000.1	Thale cress	cytosol	42.5	45.03
GSMUA_Achr3P02640_001	Banana	cytosol	34.17	40.69
GSMUA_Achr2P20980_001	Banana	cytosol	37.08	37.55
Os04t0485800-01	Rice	cytosol, extracellular	31.46	33.33
Zm00001d003250_P001	Maize	cytosol	30.21	31.73
EES12408	Sorghum	cytosol	30.21	31.73
VIT_01s0011g05490.t01	Wine grape	cytosol	21.46	31.21
Zm00001d025717_P001	Maize	cytosol	28.75	28.51
TraesCS2B01G363000.1	Wheat	nucleus	29.17	26.72
TraesCS2A01G320200.1	Wheat	nucleus	29.17	24.31
TraesCS2D01G343000.1	Wheat	nucleus	29.17	24.22
HORVU2Hr1G083980.2	Barley	nucleus	26.88	21.01

Protein Annotations

EntrezGene:100266542	wikigene:100266542	MapMan:35.1	ProteinID:CCB51232	ProteinID:CCB51232.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	UniProt:F6HG39	EMBL:FN595754	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	EntrezGene:LOC100266542	wikigene:LOC100266542	PFAM:PF12937	PANTHER:PTHR44838	PANTHER:PTHR44838:SF2
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002109B2C	ArrayExpress:VIT_01s0010g02380	EnsemblPlantsGene:VIT_01s0010g02380	EnsemblPlants:VIT_01s0010g02380.t01
unigene:Vvi.26207	RefSeq:XP_002266763	RefSeq:XP_002266763.1	RefSeq:XP_010655149.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:19479642..19483455

Molecular Weight (calculated)

53362.0 Da

IEP (calculated)

4.669

GRAVY (calculated)

-0.293

Length

480 amino acids

Sequence
(BLAST)

001: MALNFSHRPI FPAHLAEDNL VSPIRIANGY LVEGILDKNG DGFCKPWHSN REVADCFDYG RDRDDRGGSQ QESVSNDILD LLPSDPFGMD ISTTFTAITG
101: WLEDLEVDYG GYGTDEIGTS QGNYELFAGL NFIWNNAMRF QALPGKAWLD DKSDIACGFG GFTEEKEVAD PSYNCRFGPI CVVEDVLSSG NENVCGASCQ
201: AEEFREFNGS CYDGDGAAPH AAVSFALGYL GLRDLLSVER VCRSLRATVQ SDPLLWRSIH VDQPLNERIT DDILLQLTRR AQGNLQGLHL VECPRITDDG
301: LKRVLESNPR LTKLCVPGCT RLSIEGVVNM LRAFQSTGTP GIKHLRIGGL YGVAHKHFEE LKLLLGIDIH EQKNAHKPHF YNRGNFYLLG DDDRAIDIET
401: CPRCQNLRLV YDCPADGCQV KENAAQVCRA CTLCIARCVQ CGRCINDGEY EETFCLEWLC SDCFKQQPQC QETSNLCLHG

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.