Factsheet for VIT_14s0171g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g07020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	VIT_08s0007g07020.t01	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g02380.t01	Wine grape	cytosol	45.83	45.83
KRG94336	Soybean	cytosol	45.42	44.49
KRH57627	Soybean	cytosol	45.21	43.84
PGSC0003DMT400052249	Potato	cytosol	42.08	41.14
Solyc02g093840.2.1	Tomato	cytosol	41.04	40.29
PGSC0003DMT400017823	Potato	cytosol	33.12	39.07
Solyc02g068000.2.1	Tomato	cytosol	28.54	38.7
CDY20054	Canola	cytosol	29.38	36.91
Bra039085.1-P	Field mustard	cytosol	28.12	35.9
CDY00160	Canola	cytosol	27.29	35.41
AT3G27290.1	Thale cress	cytosol	27.71	34.82
VIT_01s0011g05490.t01	Wine grape	cytosol	21.25	30.91

Protein Annotations

EntrezGene:100255977	wikigene:100255977	MapMan:35.1	ProteinID:CCB62240	ProteinID:CCB62240.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	UniProt:F6I5M2	EMBL:FN596749	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085
InterPro:IPR001810	EntrezGene:LOC100255977	wikigene:LOC100255977	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44838
PANTHER:PTHR44838:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00015C98B3	ArrayExpress:VIT_14s0171g00480	EnsemblPlantsGene:VIT_14s0171g00480
EnsemblPlants:VIT_14s0171g00480.t01	unigene:Vvi.23575	RefSeq:XP_002270874	RefSeq:XP_002270874.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:26273507..26275994

Molecular Weight (calculated)

53945.1 Da

IEP (calculated)

4.840

GRAVY (calculated)

-0.340

Length

480 amino acids

Sequence
(BLAST)

001: MELNFGGEGK GMFSSVNFIN GYFVDGFGDK SLDGFGNLLN MDCESDNPQD RRMGKSEKEG SCEAVSDDIV DRLPADPFNM DIRTTFTAFK GWVGDFEKDS
101: IGFGVGEMEA MEAEGEDRGL YANLNLVWSG AMRFQPEFSN AEKSVPCNEF DGLLMDKDLC DGGFSEFLSF SRHGNRINGN QEKEFQACTK VHPDDETGEP
201: HDALFFSLAY LGVQDLLVVE RVCRSLCNVV RSDPLLWRNI CIDQPLSDKI TDDALLQLTG RAQGSLQGLS LVQCPRITDS GLKRVLENNP RLTKLCVPGC
301: VRLSVDCILL NLKAFKSAGT LGIKHLRISG LNGVTDQHFE ELKLLLGVDN HKQLRTHKPR FYHGEQLYLS CDDDRAIDIE VCPRCQKVRL VYDCPSESCQ
401: GKHQSAQLCR ACTLCIARCF HCGRCINDCD YEETFCLDLL CLDCFKQLLN CQERQEEMGA PSSKHTIFHQ ETRYRFCLYG

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.