Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g059010.2.1 | |
| Solyc10g078950.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G27290.1 | Solyc03g059010.2.1 | AT3G58560.1 | 21798944 |
| AT3G27290.1 | Solyc10g078950.1.1 | AT3G58560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017823 | Potato | cytosol | 89.27 | 77.64 |
| Solyc02g093840.2.1 | Tomato | cytosol | 39.83 | 28.83 |
| VIT_14s0171g00480.t01 | Wine grape | cytosol | 38.7 | 28.54 |
| CDY00160 | Canola | cytosol | 27.4 | 26.22 |
| CDY20054 | Canola | cytosol | 27.97 | 25.92 |
| Bra039085.1-P | Field mustard | cytosol | 27.4 | 25.8 |
| KRG94336 | Soybean | cytosol | 35.59 | 25.71 |
| KRH57627 | Soybean | cytosol | 35.59 | 25.45 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 33.9 | 25.0 |
| AT3G27290.1 | Thale cress | cytosol | 26.84 | 24.87 |
| Solyc01g005450.2.1 | Tomato | extracellular | 17.51 | 20.2 |
Protein Annotations
| EnsemblPlants:Solyc02g068000.2.1 | EnsemblPlantsGene:Solyc02g068000.2 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44838 |
| PANTHER:PTHR44838:SF1 | SEG:seg | SUPFAM:SSF52047 | UniParc:UPI0002767750 | UniProt:K4B7D2 | MapMan:35.1 |
Description
No Description!
Coordinates
chr2:+:38065892..38069133
Molecular Weight (calculated)
39465.8 Da
IEP (calculated)
5.129
GRAVY (calculated)
-0.414
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWNQGEGSS SGIKFDEGGG FSFNWEEEEF DETADLLPSD PFNMECRNQR TGFSTMTSWL EDFWFKIDEN EVAKLDSFLI RKMGIHQGAG FQLIDGNCEP
101: VGMIVKEGLN GGHGLMDGDT TDNDQGRIKD HCGVNEGNPH QALLLSLGYL GLGDLFVVER VSKPLRDAVV GDPLLWKNIN IVPPFCTNIT NDILINLTNR
201: AQGNLHSLSL FHCSKLTDAG MKHVLDRNPN LSKLNVQGCA RLTADGMLSN LKDWKTAGKN RLKYLGIYGL SGLTDKHMDE FKLLTGVDNS KLPTTRKPRF
301: FGGGRPRLIF DDDRDIDVEV CPICQRFELV YDCTSESCQK QKALGSHNAF EHQI
101: VGMIVKEGLN GGHGLMDGDT TDNDQGRIKD HCGVNEGNPH QALLLSLGYL GLGDLFVVER VSKPLRDAVV GDPLLWKNIN IVPPFCTNIT NDILINLTNR
201: AQGNLHSLSL FHCSKLTDAG MKHVLDRNPN LSKLNVQGCA RLTADGMLSN LKDWKTAGKN RLKYLGIYGL SGLTDKHMDE FKLLTGVDNS KLPTTRKPRF
301: FGGGRPRLIF DDDRDIDVEV CPICQRFELV YDCTSESCQK QKALGSHNAF EHQI
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Arabidopsis Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.