Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 3
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400029795 Potato cytosol 97.5 90.41
KRH71804 Soybean cytosol 55.79 81.72
VIT_08s0007g07020.t01 Wine grape cytosol 85.92 79.93
Solyc03g059010.2.1 Tomato cytosol, nucleus, plastid 79.86 75.42
KRH38033 Soybean cytosol 80.39 75.17
KRH68083 Soybean cytosol 80.21 74.75
KRG96349 Soybean cytosol 79.68 74.5
CDX67753 Canola cytosol 75.94 71.0
AT3G58560.1 Thale cress cytosol 76.11 70.93
CDX67751 Canola cytosol 74.69 70.78
CDY00572 Canola cytosol 75.58 70.67
Bra003342.1-P Field mustard cytosol 74.51 70.61
Bra014566.1-P Field mustard cytosol 75.4 70.5
Bra003344.1-P Field mustard cytosol 71.84 70.33
AT3G58580.1 Thale cress cytosol 75.4 70.15
CDX98303 Canola cytosol 73.8 69.93
CDX88992 Canola mitochondrion 68.98 69.86
Bra007403.1-P Field mustard cytosol 74.15 69.68
CDX71943 Canola cytosol 74.51 69.44
Os10t0412100-01 Rice cytosol 74.87 69.42
GSMUA_Achr4P17200_001 Banana cytosol 72.19 69.35
GSMUA_Achr9P25420_001 Banana cytosol 72.01 69.3
Os03t0166800-01 Rice cytosol 74.87 69.19
CDY49233 Canola cytosol 73.97 69.17
OQU91798 Sorghum cytosol 74.51 68.98
Zm00001d032979_P003 Maize cytosol 74.33 68.93
TraesCS1A01G137900.1 Wheat cytosol 73.62 68.26
TraesCS1B01G153300.2 Wheat cytosol 73.62 68.26
TraesCS1D01G134400.1 Wheat cytosol 73.62 68.26
HORVU1Hr1G035390.1 Barley cytosol 73.26 67.93
Zm00001d014187_P011 Maize cytosol 72.73 67.66
GSMUA_Achr9P11040_001 Banana cytosol, peroxisome, vacuole 68.98 67.07
KXG40109 Sorghum mitochondrion 73.08 66.13
CDX98305 Canola plastid 74.87 65.93
Zm00001d027811_P001 Maize mitochondrion 72.73 63.35
KRH71803 Soybean cytosol 20.5 62.5
GSMUA_Achr6P29710_001 Banana endoplasmic reticulum, golgi 72.19 55.48
Solyc08g075010.2.1 Tomato mitochondrion 16.4 23.65
Solyc03g119570.1.1 Tomato nucleus 17.29 23.21
Solyc03g119710.2.1 Tomato plastid 15.86 20.51
Solyc08g067420.2.1 Tomato plastid 21.03 13.52
Protein Annotations
EnsemblPlants:Solyc10g078950.1.1EnsemblPlantsGene:Solyc10g078950.1Gene3D:3.60.10.10InterPro:Endo/exonu/phosph_ase_sfInterPro:Endo/exonuclease/phosphataseInterPro:IPR036691
InterPro:Zfn-C6H2PANTHER:PTHR12121PANTHER:PTHR12121:SF29PFAM:PF03372PFAM:PF15801SEG:seg
SUPFAM:SSF56219UniParc:UPI000276A576UniProt:K4D2D6MapMan:16.8.2.1.2.1::
Description
No Description!
Coordinates
chr10:-:60588263..60596987
Molecular Weight (calculated)
62023.0 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.199
Length
561 amino acids
Sequence
(BLAST)
001: MLSVLRVHLP SDIPIVGCEL TPYVLLRRPN KDKSVISEDV SESAPIDGYF LRYKWYRIQS DKKVAICSIH PSEQATLQCL GCVKAKIPVS KSYHCSPKCF
101: SDAWQHHRVL HERAASAVNE NGNGEEEIFG QFNSTGSGVS NASLASSQSS GSLANGNAPL YPAAITQRNG GETWFEVGRS KTYTPTADDI GHALKFECVV
201: VDAETKLPVG PSSTILTSRV IPAPCPTPRR MFSVSGVDIP GHLDLDGRLS SSGTFTVLSY NILSDAYATN ELYSYCPSWA LSWAYRRQNL LREIVGYRAD
301: IVCLQEVQSN HFEEFFAPEL DKHGYQALFK RKTAEVFSGS INNIDGCATF FRRDRFSHVK KYEVEFNKAA QSLTDAVVPI AQKKTALNRL VKDNVALIVV
401: LEAKFSNQGV DNPGKRQLVC VANTHVNVQQ ELRDVKLWQV HTLLKGLEKI AASADIPMLV CGDFNSMPGS APHTLLALGK VDPMHQDLVV DPLGILRPAS
501: KLTHQLPLVS AYSSFARMGV GLGLEQQRRR MDPNTNEPLF TNCTRDFIGT HDYIFYSGLI H
Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)
001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
Arabidopsis Description
CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.