Factsheet for Bra003342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010484.1-P
Bra013270.1-P
Bra013825.1-P
Bra019212.1-P
Bra021027.1-P
Bra025716.1-P
Bra025717.1-P
Bra025718.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	Bra013270.1-P	AT4G17950.1	21798944
AT3G58560.1	Bra021027.1-P	AT4G17950.1	21798944
AT3G58560.1	Bra025716.1-P	AT4G17950.1	21798944
AT3G58560.1	Bra025717.1-P	AT4G17950.1	21798944
AT3G58560.1	Bra025718.1-P	AT4G17950.1	21798944
AT3G58560.1	Bra010484.1-P	AT4G24690.1	21798944
AT3G58560.1	Bra013825.1-P	AT4G24690.1	21798944
AT3G58560.1	Bra019212.1-P	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67751	Canola	cytosol	99.32	99.32
CDX98303	Canola	cytosol	97.8	97.8
AT3G58560.1	Thale cress	cytosol	90.03	88.54
KRH71803	Soybean	cytosol	26.01	83.7
VIT_08s0007g07020.t01	Wine grape	cytosol	79.05	77.61
Bra014566.1-P	Field mustard	cytosol	77.87	76.83
Bra003344.1-P	Field mustard	cytosol	74.16	76.61
PGSC0003DMT400029795	Potato	cytosol	78.21	76.53
KRH38033	Soybean	cytosol	77.53	76.5
Bra007403.1-P	Field mustard	cytosol	76.86	76.21
KRH68083	Soybean	cytosol	77.36	76.08
KRG96349	Soybean	cytosol	77.03	76.0
Solyc10g078950.1.1	Tomato	cytosol	70.61	74.51
KRH71804	Soybean	cytosol	47.3	73.11
GSMUA_Achr4P17200_001	Banana	cytosol	71.96	72.95
GSMUA_Achr9P25420_001	Banana	cytosol	71.11	72.21
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	69.76	71.58
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	71.45	71.21
Os10t0412100-01	Rice	cytosol	72.64	71.07
HORVU1Hr1G035390.1	Barley	cytosol	71.79	70.25
TraesCS1B01G153300.2	Wheat	cytosol	71.62	70.08
TraesCS1A01G137900.1	Wheat	cytosol	71.62	70.08
TraesCS1D01G134400.1	Wheat	cytosol	71.62	70.08
Os03t0166800-01	Rice	cytosol	71.79	70.02
OQU91798	Sorghum	cytosol	71.62	69.97
Zm00001d032979_P003	Maize	cytosol	71.45	69.92
Zm00001d014187_P011	Maize	cytosol	70.27	68.99
KXG40109	Sorghum	mitochondrion	70.95	67.74
Zm00001d027811_P001	Maize	mitochondrion	69.76	64.13
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	64.53	52.33
Bra023195.1-P	Field mustard	nucleus	17.74	28.93
Bra038426.1-P	Field mustard	plastid	18.07	27.86
Bra015956.1-P	Field mustard	plastid	19.26	25.05
Bra022326.1-P	Field mustard	mitochondrion, plastid	18.07	23.21
Bra008968.1-P	Field mustard	mitochondrion, plastid	20.78	16.25

Protein Annotations

MapMan:16.8.2.1.2.1	Gene3D:3.60.10.10	EnsemblPlantsGene:Bra003342	EnsemblPlants:Bra003342.1	EnsemblPlants:Bra003342.1-P	InterPro:Endo/exonu/phosph_ase_sf
InterPro:Endo/exonuclease/phosphatase	GO:GO:0000932	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0005986	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019252	InterPro:IPR036691	UniProt:M4CGK9
PFAM:PF03372	PFAM:PF15801	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	SUPFAM:SSF56219	UniParc:UPI0002541697
InterPro:Zfn-C6H2	SEG:seg	:	:	:	:

Description

AT3G58560 (E=1e-293) | endonuclease/exonuclease/phosphatase family protein

Coordinates

chrA07:-:12705792..12708461

Molecular Weight (calculated)

65882.9 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.216

Length

592 amino acids

Sequence
(BLAST)

001: MLSVIRVHLP SEVPIVGCEL TPYVLLRRPD KTATTDDVPE SAPLEGHFLK YRWYRVQSDK KVAICSVHPS REATLQCLGC IKTKVPVTKS YHCSTKCFTD
101: AWQHHRVLHE RAAAEGNDEE EELLRLNSSG SVSSILSTVS SLTNGSSSSV YPSAITQKTG AGGETLVEVG RSKTYTPMAD DVGQVLKFEC VVVNAETKQN
201: VGHSCTILTS RVIPAPSPSP RRMIPVSGTV DSNGRPMSMG SFTVLSYNIL ADAYASSEIY SYCPTWALSW TYRRQNLLRE IVKYHADIVC LQEVQNDHFD
301: EFFAPELDKH GYQALFKRKT NEVFVGNTNT IDGCATFYRR DRFSHVKKYE VEFNKAAQSL TEALIPVPQK KIALNRLVKD NVALIVVLEA KFGNQAADIP
401: GKRQLLCVAN THVNISHELK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNTVPASAPH SLLAVGKVDP MHPDLMVDPL GILRPHTKLT HQLPLVSAYS
501: SFARMGGSLT AEQQRRRMDP ASNEPLFTNC TRDFIGTLDY IFYTADTLTV ESLLELLDEE SLRKDTALPS PEWSSDHIAL LAEFRCMPKT RR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.