Factsheet for Zm00001d027811_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003300_P001
Zm00001d017072_P002
Zm00001d026036_P001
Zm00001d030053_P003
Zm00001d040272_P001
Zm00001d047042_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	Zm00001d026036_P001	AT4G17950.1	21798944
AT3G58560.1	Zm00001d030053_P003	AT4G17950.1	21798944
AT3G58560.1	Zm00001d047042_P004	AT4G17950.1	21798944
AT3G58560.1	Zm00001d003300_P001	AT4G24690.1	21798944
AT3G58560.1	Zm00001d017072_P002	AT4G24690.1	21798944
AT3G58560.1	Zm00001d040272_P001	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40109	Sorghum	mitochondrion	93.32	96.94
Os03t0166800-01	Rice	cytosol	81.06	86.0
Zm00001d032979_P003	Maize	cytosol	78.11	83.14
Zm00001d014187_P011	Maize	cytosol	76.86	82.09
KRH71803	Soybean	cytosol	22.98	80.43
VIT_08s0007g07020.t01	Wine grape	cytosol	71.27	76.12
KRG96349	Soybean	cytosol	69.88	75.0
GSMUA_Achr9P25420_001	Banana	cytosol	67.86	74.96
PGSC0003DMT400029795	Potato	cytosol	69.88	74.38
KRH68083	Soybean	cytosol	69.25	74.09
GSMUA_Achr4P17200_001	Banana	cytosol	66.61	73.46
KRH38033	Soybean	cytosol	68.17	73.17
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	65.53	73.14
Solyc10g078950.1.1	Tomato	cytosol	63.35	72.73
CDY00572	Canola	cytosol	66.77	71.67
CDX67753	Canola	cytosol	66.61	71.5
Bra014566.1-P	Field mustard	cytosol	66.46	71.33
CDX88992	Canola	mitochondrion	61.02	70.94
Bra003344.1-P	Field mustard	cytosol	63.04	70.86
AT3G58580.1	Thale cress	cytosol	66.3	70.81
AT3G58560.1	Thale cress	cytosol	66.15	70.76
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	64.75	70.2
CDX67751	Canola	cytosol	64.44	70.1
CDX98303	Canola	cytosol	64.13	69.76
Bra003342.1-P	Field mustard	cytosol	64.13	69.76
KRH71804	Soybean	cytosol	41.46	69.71
Bra007403.1-P	Field mustard	cytosol	64.44	69.51
CDX71943	Canola	cytosol	64.75	69.27
CDY49233	Canola	cytosol	64.29	69.0
CDX98305	Canola	plastid	66.46	67.19
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	62.89	55.48
Zm00001d038091_P006	Maize	plastid	15.99	25.06
Zm00001d045673_P003	Maize	plastid	16.77	24.38
Zm00001d044447_P007	Maize	mitochondrion	13.2	14.86

Protein Annotations

EnsemblPlants:Zm00001d027811_P001	EnsemblPlants:Zm00001d027811_T001	EnsemblPlantsGene:Zm00001d027811	EntrezGene:100280629	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf
InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691	InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372
PFAM:PF15801	ProteinID:ONL94045.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI000844E8CF	UniProt:A0A1D6JPX6
MapMan:16.8.2.1.2.1	:	:	:	:	:

Description

CCR4-NOT transcription complex subunit 6

Coordinates

chr1:+:14311486..14318456

Molecular Weight (calculated)

71612.2 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.217

Length

644 amino acids

Sequence
(BLAST)

001: MTQVKPAPGG RMLTVLRVHL PSEIPIVGCE ITPYVLLRRP DGGVFTDDVS ETAPVDGYFM RYKWYRIQSD RRAAICSVHP TEQATLQCIG CLKSKIPVAK
101: SYHCSSKCFS DAWQHHKVLH DRAISALNEN GTEDDELFGR FGSGSSSSGV ISAALSGSTS NLSLSSGVNN GPTPVYPTGT EKSSGETWFE VGWSRTYTAT
201: TDDIGHVLRF ECIVVDVETR GTVRAPTSVM TSRVIPAPTP TPRRLIPVNA ADAMVHFDLD SRTSSFGTFT VLSYNILADT YATSDTYSYC PTWALTWAYR
301: RQNLLREIIG YHADIICLQE VQSNHFEDFF SPELDKHGYQ PLYKKRTTEV YSGSPQAIDG CATFFRRDRF SHVKKYEVEF NKAAQSLTDA IIPAAQKKLA
401: LNRLVKDNIA LIAVLEAKFS NHGTENPSKR QLLCVPTPTC LGLKGYVDVD VDVHLEFIMA NTHINIHHDL KDVKLWQIHT LLKGLEKIAV SADIPMLVCG
501: DFNSTPGSTS HGLLARGKVD HLHPDLAIDP LGILRPLSKL THQLPLVSAY SSFVSMAGVG YDLDHQRRRM DPGTNEPLFT NCTRDFTGTL DYIFYTADSL
601: TVESLLELLD EDSLRKDTAL PSPEWSSDHI ALLAEFRCKL RVRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.