CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014566.1-P	Field mustard	cytosol	99.46	91.83
CDY00572	Canola	cytosol	98.74	91.17
CDX67753	Canola	cytosol	94.04	86.83
AT3G58580.1	Thale cress	cytosol	92.6	85.07
CDX71943	Canola	cytosol	91.16	83.89
CDY49233	Canola	cytosol	90.25	83.33
KRH71803	Soybean	cytosol	27.62	83.15
CDX98305	Canola	plastid	92.96	80.85
CDX98303	Canola	cytosol	75.63	70.78
PGSC0003DMT400029795	Potato	cytosol	77.26	70.74
CDX67751	Canola	cytosol	75.45	70.61
KRH38033	Soybean	cytosol	76.35	70.5
VIT_08s0007g07020.t01	Wine grape	cytosol	76.71	70.48
KRG96349	Soybean	cytosol	75.99	70.17
KRH68083	Soybean	cytosol	75.81	69.77
Solyc10g078950.1.1	Tomato	cytosol	69.86	68.98
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	71.66	66.83
Os10t0412100-01	Rice	cytosol	72.92	66.78
TraesCS1A01G137900.1	Wheat	cytosol	72.2	66.12
TraesCS1B01G153300.2	Wheat	cytosol	72.2	66.12
TraesCS1D01G134400.1	Wheat	cytosol	72.2	66.12
HORVU1Hr1G035390.1	Barley	cytosol	72.02	65.95
Os03t0166800-01	Rice	cytosol	72.02	65.73
GSMUA_Achr9P25420_001	Banana	cytosol	68.77	65.35
OQU91798	Sorghum	cytosol	71.48	65.35
Zm00001d032979_P003	Maize	cytosol	71.3	65.29
GSMUA_Achr4P17200_001	Banana	cytosol	68.77	65.24
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	66.97	64.3
Zm00001d014187_P011	Maize	cytosol	69.86	64.18
KXG40109	Sorghum	mitochondrion	71.48	63.87
KRH71804	Soybean	cytosol	43.86	63.45
Zm00001d027811_P001	Maize	mitochondrion	70.94	61.02
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	61.55	46.71
CDY12304	Canola	plastid	18.59	25.75
CDY12415	Canola	plastid	16.97	25.27
CDY24484	Canola	mitochondrion	20.22	24.89
CDX92241	Canola	mitochondrion, nucleus, plastid	20.22	24.89
CDY27147	Canola	plastid	17.33	24.87
CDX96494	Canola	plastid	19.49	24.49
CDX73024	Canola	plastid	19.68	24.01
CDY62302	Canola	mitochondrion, plastid	18.59	23.95
CDX97099	Canola	plastid	20.94	15.43
CDX69764	Canola	mitochondrion, plastid	20.76	15.21
CDX97100	Canola	plastid	0.18	0.14

Protein Annotations

EnsemblPlants:CDX88992	EnsemblPlantsGene:GSBRNA2T00149104001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:CDX88992
ProteinID:CDX88992.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0004EE5565	MapMan:16.8.2.1.2.1	:

Description

BnaA04g01940D

Coordinates

chrLK031857:-:404286..407576

Molecular Weight (calculated)

61890.1 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.248

Length

554 amino acids

Sequence
(BLAST)

001: MVLLMFLYRV QSDKKVTICS VHPTEQATLQ CVFCSKRRAL VAKSYHCSPK CFTDAWQHHK TLHERAAAEN GNEEDELTRF NSTGSGVLAS TLSGSMSNLT
101: LANNGPTPFY PSSITQKNGG ETLIEVGGCK TYTPTADDIG YVLKFECVVA NAETKQFVGH PSTILTSRVI PAPSPSPRRL IPVNGADVMG HLDQDGRIQS
201: AGSFTVLSYN ILSDTSASSD LYSYCPPWAL SWPYRRQNLL REIVGYRADV VCLQEVQSDH FHEIFAPELD KHGYQALYKR KTNEVLSGST SVIDGCATFF
301: RRDRFSHVKK YDVEFNKAAQ SLTEAIIPHT QKRTALNRLV KDNIALIVVL EAKFGNQPTD PSGKRQLICV ANTHVNVQQE LKDVKLWQVH TLLKGLEKIA
401: ASADIPMLVC GDFNTLPGSA PHTLLVMGKV DPLHPDLMVD PLNILRPHTK LTHQLPLVSA YTSFVRSVMG LGLEQHRRRM DLNTNEPLFT NCTREFIGTH
501: DYIFYTADTL MVESLLELLD EDGLRKDTAL PSPEWSSNHI ALLAEFRCMP RTRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.