Factsheet for Os03t0166800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0593700-01
Os04t0476800-01
Os04t0589900-01
Os10t0572900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	Os04t0589900-01	AT4G17950.1	21798944
AT3G58560.1	Os10t0572900-02	AT4G17950.1	21798944
AT3G58560.1	Os02t0593700-01	AT4G24690.1	21798944
AT3G58560.1	Os04t0476800-01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40109	Sorghum	mitochondrion	88.3	86.45
Os10t0412100-01	Rice	cytosol	85.17	85.45
KRH71803	Soybean	cytosol	24.88	82.07
Zm00001d027811_P001	Maize	mitochondrion	86.0	81.06
VIT_08s0007g07020.t01	Wine grape	cytosol	78.58	79.1
GSMUA_Achr9P25420_001	Banana	cytosol	74.14	77.19
PGSC0003DMT400029795	Potato	cytosol	76.28	76.53
GSMUA_Achr4P17200_001	Banana	cytosol	73.15	76.03
KRG96349	Soybean	cytosol	74.14	75.0
KRH68083	Soybean	cytosol	74.3	74.92
Solyc10g078950.1.1	Tomato	cytosol	69.19	74.87
KRH38033	Soybean	cytosol	73.81	74.67
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.68	74.35
AT3G58560.1	Thale cress	cytosol	71.99	72.59
CDX67751	Canola	cytosol	70.35	72.13
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	70.51	72.05
CDX88992	Canola	mitochondrion	65.73	72.02
CDY00572	Canola	cytosol	71.17	72.0
Bra014566.1-P	Field mustard	cytosol	71.17	72.0
CDX98303	Canola	cytosol	70.18	71.96
Bra003342.1-P	Field mustard	cytosol	70.02	71.79
AT3G58580.1	Thale cress	cytosol	71.0	71.48
CDX67753	Canola	cytosol	70.51	71.33
KRH71804	Soybean	cytosol	44.98	71.28
Bra003344.1-P	Field mustard	cytosol	67.22	71.2
Bra007403.1-P	Field mustard	cytosol	69.85	71.02
CDX71943	Canola	cytosol	70.18	70.76
CDY49233	Canola	cytosol	69.69	70.5
CDX98305	Canola	plastid	69.69	66.41
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	66.89	55.62
Os06t0264900-00	Rice	plastid	13.18	26.14
Os05t0389500-02	Rice	mitochondrion	15.82	24.68
Os01t0610600-01	Rice	mitochondrion	19.6	13.18

Protein Annotations

MapMan:16.8.2.1.2.1	Gene3D:3.60.10.10	EntrezGene:4331740	ProteinID:ABF94164.1	ProteinID:ABF94165.1	ProteinID:BAF10991.1
ProteinID:BAS82478.1	ProteinID:EAZ25713.1	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0004527	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036691	EnsemblPlantsGene:Os03g0166800	EnsemblPlants:Os03t0166800-01
PFAM:PF03372	PFAM:PF15801	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	UniProt:Q10R99	SUPFAM:SSF56219
UniParc:UPI0000DB4C4A	RefSeq:XP_015632782.1	InterPro:Zfn-C6H2	SEG:seg	:	:

Description

CARBON CATABOLITE REPRESSOR 4BCarbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation (Os03t0166800-01);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os03t0166800-02)

Coordinates

chr3:+:3616611..3622202

Molecular Weight (calculated)

67577.3 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.266

Length

607 amino acids

Sequence
(BLAST)

001: MLTILRVHLP SEIPIVGCEI TPYVLLRRPD GGISTEDVHE AIPLDGHFMR YKWYRIQSDR RVAVCNVHPT EQATIQCLGC LKSKIPVAKS YHCSAKCFSD
101: AWQHHRVLHE RALSALNENG NEEEELFGRF GSGNAGIINA SLSGSTSNIG QSSSVNNGPT PVYPTGTEKN SGETWFEVGR SRTYTPTADD IGHALRFECV
201: AVDSETRSSV GAPTSIMTSR VIPAPTPTPR RLIPVNSADV MGHFDLDSRN SSFGTFTVLS YNILADTYAT SDTYSYCPTW ALSWPYRRQN LLREIIGYHA
301: DIICLQEVQS NHFEEFFAPE LDKHGYQALF KKRTTEVYTG NLQSIDGCAT FFRRDKFSHV KKYEVEFNKA AQSLTDAIIP AAQRKVALTR LIKDNIALIA
401: VLEAKFGSHG ADNPSKRQLL CVANTHINVH QDLKDVKLWQ VNTLLKGLEK IAVSADIPML VCGDFNATPG STPHGLLAMG KVDLMHPDLA IDPLGILRPA
501: SKLTHQLPLV SAYSSFARMV GAGYDLEHQR RRMDPATNEP LFTNCTRDFT GTIDYIFYTA DSLSVESLLE LLDEDSLRKD TALPSPEWSS DHIALLAEFR
601: CKPRVRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.