Factsheet for GSMUA_Achr9P11040_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr5P03370_001
GSMUA_Achr9P01840_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr9P01840_001	AT4G24690.1	21798944
AT3G58560.1	GSMUA_AchrUn_...	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P25420_001	Banana	cytosol	86.14	85.25
KRH71803	Soybean	cytosol	25.3	79.35
GSMUA_Achr4P17200_001	Banana	cytosol	80.24	79.28
VIT_08s0007g07020.t01	Wine grape	cytosol	75.04	71.81
KRG96349	Soybean	cytosol	73.66	70.83
Os03t0166800-01	Rice	cytosol	74.35	70.68
PGSC0003DMT400029795	Potato	cytosol	74.0	70.58
Os10t0412100-01	Rice	cytosol	74.0	70.58
OQU91798	Sorghum	cytosol	74.0	70.46
Zm00001d032979_P003	Maize	cytosol	73.83	70.41
KRH38033	Soybean	cytosol	73.14	70.33
KRH68083	Soybean	cytosol	73.31	70.27
HORVU1Hr1G035390.1	Barley	cytosol	73.48	70.08
CDX67751	Canola	cytosol	71.75	69.93
Bra003342.1-P	Field mustard	cytosol	71.58	69.76
TraesCS1B01G153300.2	Wheat	cytosol	73.14	69.75
TraesCS1D01G134400.1	Wheat	cytosol	72.96	69.59
TraesCS1A01G137900.1	Wheat	cytosol	72.79	69.42
AT3G58560.1	Thale cress	cytosol	72.1	69.1
CDX98303	Canola	cytosol	70.88	69.09
Solyc10g078950.1.1	Tomato	cytosol	67.07	68.98
Zm00001d014187_P011	Maize	cytosol	71.58	68.49
KXG40109	Sorghum	mitochondrion	73.48	68.39
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	68.98	67.0
CDY00572	Canola	cytosol	69.67	67.0
CDX67753	Canola	cytosol	69.67	67.0
CDX88992	Canola	mitochondrion	64.3	66.97
Bra014566.1-P	Field mustard	cytosol	69.5	66.83
AT3G58580.1	Thale cress	cytosol	69.67	66.67
Bra007403.1-P	Field mustard	cytosol	68.98	66.67
Bra003344.1-P	Field mustard	cytosol	66.03	66.49
CDY49233	Canola	cytosol	68.98	66.33
CDX71943	Canola	cytosol	68.98	66.11
Zm00001d027811_P001	Maize	mitochondrion	73.14	65.53
KRH71804	Soybean	cytosol	43.33	65.27
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	79.38	62.74
CDX98305	Canola	plastid	68.8	62.32
GSMUA_Achr7P12580_001	Banana	mitochondrion	15.42	27.64
GSMUA_AchrUn_...	Banana	cytosol	14.04	25.55
GSMUA_Achr6P09650_001	Banana	nucleus	17.68	21.61
GSMUA_Achr1P14560_001	Banana	nucleus	18.89	14.14

Protein Annotations

EnsemblPlants:GSMUA_Achr9P11040_001	EnsemblPlants:GSMUA_Achr9T11040_001	EnsemblPlantsGene:GSMUA_Achr9G11040_001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801
SUPFAM:SSF56219	UniParc:UPI0002950074	UniProt:M0TZB3	MapMan:16.8.2.1.2.1	:	:

Description

Carbon catabolite repressor protein 4 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11040_001]

Coordinates

chr9:+:7164257..7170351

Molecular Weight (calculated)

64520.2 Da

IEP (calculated)

7.557

GRAVY (calculated)

-0.231

Length

577 amino acids

Sequence
(BLAST)

001: MLTVLRIHLP SEVPIVGCEI APYVLLRRPD GSVSIDEVPE PAPLIGYCMK YKWYRNQGDQ KVAICSVHPT EQATLQCLVC LKEKVPITKS YHCTPRCLSD
101: AWQHHRSLHD RAKKTAKENG AEEEELFGRF NSNNGSISMY PTAVAEKTGE AWSEVGFSRT YTPTSDDINH VLKFECVAID VETRKHVGNV NAILTARVIP
201: APSPTPRHMI PVNVALSGQL NLDGRIASGT FSVLSYNILS DAYATNEVYS YCPTWALSWP YRRQNLLREI IGYQADIVCL QEVQSDHFEE FFAPELDKHG
301: YQALYKKKTS EVYSGNPNTL DGCATFFRRD RFSHVKKYEV EFNKAAQSSS AGQKKVALSR LIKDNIALIV VLEAKFTSRV SGNPGKRQLI CVANTHVNVH
401: HEHKDVKLWQ VHTLLKGLEK IAVSADIPML VCGDFNSVPG SAPHALLANG KVGTLHPDLA VDPLGILRST NNLTHQLPLV SAYSSFARMA GVTPGLEQQR
501: RRMDALTLEP LFTNCSRDFV GTVDYIFYTA DSLFVESVLE LLDEENLRKH TAIPSPEWSS DHIALLAEFR CKPRIRC

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.