CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76549
CDX78814
CDX92649
CDY01503
CDY01506
CDY03427
CDY08882
CDY08946
CDY11029
CDY24845
CDY26691
CDY26692
CDY26693
CDY26694
CDY34302
CDY41027
CDY41028
CDY44500
CDY68252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	CDX76549	AT4G17950.1	21798944
AT3G58560.1	CDX78814	AT4G17950.1	21798944
AT3G58560.1	CDY01503	AT4G17950.1	21798944
AT3G58560.1	CDY01506	AT4G17950.1	21798944
AT3G58560.1	CDY08882	AT4G17950.1	21798944
AT3G58560.1	CDY26691	AT4G17950.1	21798944
AT3G58560.1	CDY26692	AT4G17950.1	21798944
AT3G58560.1	CDY26693	AT4G17950.1	21798944
AT3G58560.1	CDY26694	AT4G17950.1	21798944
AT3G58560.1	CDY41027	AT4G17950.1	21798944
AT3G58560.1	CDY41028	AT4G17950.1	21798944
AT3G58560.1	CDY44500	AT4G17950.1	21798944
AT3G58560.1	CDY68252	AT4G17950.1	21798944
AT3G58560.1	CDX92649	AT4G24690.1	21798944
AT3G58560.1	CDY03427	AT4G24690.1	21798944
AT3G58560.1	CDY08946	AT4G24690.1	21798944
AT3G58560.1	CDY11029	AT4G24690.1	21798944
AT3G58560.1	CDY24845	AT4G24690.1	21798944
AT3G58560.1	CDY34302	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003342.1-P	Field mustard	cytosol	99.32	99.32
CDX98303	Canola	cytosol	98.14	98.14
AT3G58560.1	Thale cress	cytosol	89.86	88.37
KRH71803	Soybean	cytosol	26.01	83.7
VIT_08s0007g07020.t01	Wine grape	cytosol	78.89	77.45
CDY00572	Canola	cytosol	77.87	76.83
PGSC0003DMT400029795	Potato	cytosol	78.38	76.69
KRH38033	Soybean	cytosol	77.7	76.67
CDX67753	Canola	cytosol	77.7	76.67
KRH68083	Soybean	cytosol	77.53	76.25
KRG96349	Soybean	cytosol	77.2	76.17
CDX88992	Canola	mitochondrion	70.61	75.45
CDY49233	Canola	cytosol	76.35	75.33
CDX71943	Canola	cytosol	76.52	75.25
Solyc10g078950.1.1	Tomato	cytosol	70.78	74.69
KRH71804	Soybean	cytosol	47.47	73.37
GSMUA_Achr4P17200_001	Banana	cytosol	72.13	73.12
GSMUA_Achr9P25420_001	Banana	cytosol	71.28	72.38
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	69.93	71.75
Os10t0412100-01	Rice	cytosol	72.8	71.24
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	71.45	71.21
CDX98305	Canola	plastid	76.52	71.11
HORVU1Hr1G035390.1	Barley	cytosol	71.96	70.41
Os03t0166800-01	Rice	cytosol	72.13	70.35
OQU91798	Sorghum	cytosol	71.96	70.3
TraesCS1D01G134400.1	Wheat	cytosol	71.79	70.25
TraesCS1B01G153300.2	Wheat	cytosol	71.79	70.25
TraesCS1A01G137900.1	Wheat	cytosol	71.79	70.25
Zm00001d032979_P003	Maize	cytosol	71.62	70.08
Zm00001d014187_P011	Maize	cytosol	70.61	69.32
KXG40109	Sorghum	mitochondrion	71.45	68.23
Zm00001d027811_P001	Maize	mitochondrion	70.1	64.44
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	64.7	52.47
CDY12304	Canola	plastid	18.92	28.0
CDY27147	Canola	plastid	18.07	27.72
CDY12415	Canola	plastid	17.23	27.42
CDY62302	Canola	mitochondrion, plastid	18.92	26.05
CDX96494	Canola	plastid	19.26	25.85
CDX73024	Canola	plastid	19.43	25.33
CDX92241	Canola	mitochondrion, nucleus, plastid	18.92	24.89
CDY24484	Canola	mitochondrion	18.58	24.44
CDX97099	Canola	plastid	21.11	16.62
CDX69764	Canola	mitochondrion, plastid	20.78	16.27
CDX97100	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX67751	EnsemblPlantsGene:GSBRNA2T00098939001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:CDX67751
ProteinID:CDX67751.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0004EDD6D7	MapMan:16.8.2.1.2.1	:

Description

BnaA07g17910D

Coordinates

chrLK031787:-:2085229..2088487

Molecular Weight (calculated)

65849.8 Da

IEP (calculated)

7.291

GRAVY (calculated)

-0.214

Length

592 amino acids

Sequence
(BLAST)

001: MLSVIRVHLP SEVPIVGCEL TPYVLLRRPD KTATTDDVPE SAPLDGHFLK YRWYRVQSDK KVAICSVHPS KEATLQCLGC IKTKVPVTKS YHCSTKCFTD
101: AWQHHRVLHE RAAAEGNDEE EELLRLNSSG SVSSILSTVS SLTNGSSSSV YPSAITQKTG AGGETLVEVG RSKTYTPMAD DVGHVLKFEC VVVNAETQQN
201: VGHSCTILTS RVIPAPSPSP RRMIPVSGTV DSNGRPMSMG SFTVLSYNIL ADAYASSEIY SYCPTWALSW TYRRQNLLRE IVKYHADIVC LQEVQNDHFD
301: EFFAPELDKH GYQALFKRKT NEVFVGNTNT IDGCATFYRR DRFSHVKKYE VEFNKAAQSL TEALIPVPQK KIALNRLVKD NVALIVVLEA KFGNQAADIP
401: GKRQLLCVAN THVNISHELK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNTVPASAPH SLLAVGKVDP MHPDLMVDPL GILRPHTKLT HQLPLVSAYS
501: SFARMGGSLT AEQQRRRMDP ASNEPLFTNC TRDFIGTLDY IFYTADTLTV ESLLELLDEE SLRKDTALPS PEWSSDHIAL LAEFRCMPKT RR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.