CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67753	Canola	cytosol	92.31	98.0
CDY00572	Canola	cytosol	88.7	94.17
CDX88992	Canola	mitochondrion	80.85	92.96
AT3G58580.1	Thale cress	cytosol	85.71	90.55
CDX71943	Canola	cytosol	85.09	90.03
CDY49233	Canola	cytosol	84.3	89.5
KRH71803	Soybean	cytosol	23.86	82.61
CDX98303	Canola	cytosol	71.27	76.69
CDX67751	Canola	cytosol	71.11	76.52
PGSC0003DMT400029795	Potato	cytosol	72.06	75.87
VIT_08s0007g07020.t01	Wine grape	cytosol	71.43	75.46
KRH38033	Soybean	cytosol	70.64	75.0
KRG96349	Soybean	cytosol	70.64	75.0
Solyc10g078950.1.1	Tomato	cytosol	65.93	74.87
KRH68083	Soybean	cytosol	70.49	74.58
Os10t0412100-01	Rice	cytosol	68.29	71.9
TraesCS1A01G137900.1	Wheat	cytosol	67.97	71.57
TraesCS1B01G153300.2	Wheat	cytosol	67.97	71.57
TraesCS1D01G134400.1	Wheat	cytosol	67.97	71.57
HORVU1Hr1G035390.1	Barley	cytosol	67.97	71.57
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	66.41	71.21
KRH71804	Soybean	cytosol	42.7	71.02
GSMUA_Achr9P25420_001	Banana	cytosol	64.68	70.67
OQU91798	Sorghum	cytosol	67.19	70.63
Zm00001d032979_P003	Maize	cytosol	67.03	70.58
GSMUA_Achr4P17200_001	Banana	cytosol	64.68	70.55
Os03t0166800-01	Rice	cytosol	66.41	69.69
Zm00001d014187_P011	Maize	cytosol	65.93	69.65
KXG40109	Sorghum	mitochondrion	67.66	69.52
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	62.32	68.8
Zm00001d027811_P001	Maize	mitochondrion	67.19	66.46
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	59.5	51.92
CDY12304	Canola	plastid	16.8	26.75
CDY12415	Canola	plastid	15.38	26.34
CDY27147	Canola	plastid	15.7	25.91
CDX96494	Canola	plastid	17.9	25.85
CDY62302	Canola	mitochondrion, plastid	17.11	25.35
CDX73024	Canola	plastid	18.05	25.33
CDY24484	Canola	mitochondrion	17.58	24.89
CDX92241	Canola	mitochondrion, nucleus, plastid	17.58	24.89
CDX97099	Canola	plastid	19.15	16.22
CDX69764	Canola	mitochondrion, plastid	18.68	15.74
CDX97100	Canola	plastid	0.16	0.14

Protein Annotations

EnsemblPlants:CDX98305	EnsemblPlantsGene:GSBRNA2T00105846001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	ProteinID:CDX98305	ProteinID:CDX98305.1	SEG:seg
SUPFAM:SSF56219	UniParc:UPI0004EC7171	MapMan:16.8.2.1.2.1	:	:	:

Description

BnaC06g16660D

Coordinates

chrLK031904:-:459737..463140

Molecular Weight (calculated)

70781.5 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.243

Length

637 amino acids

Sequence
(BLAST)

001: MVDHLTLPSI SSPFPRNHIN NQTILCFYSS SPISRCDAKA MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KSAATDDVPE SAPLDGYFLR YRWYRVHSDK
101: KVTICSVHPT QQATLQCVFC SKRRSLVSKS YHCSPKCFVD AWQHHKTLHE AENGNEEDEL VRFNSTGSGV LSGTLSGSMS NLSLASNGPT PFYPSSISQK
201: SGGETLVEVG SCKTYTPTAD DIGYVLKFEC AVANAESKQV VGHPSTILTS RVIPAPSPSP RKLIPVNGAD VMGHLDQDGR IQSAGSFTVL SYNILSDTSA
301: SSDLYSYCPP WALSWSYRRH NLLREIVGYR ADVVCLQEVQ SDHFHEIFAP ELDKHGYQAL YKRKTNEVLS GSTSAIDGCA TFFRRDRFSH VKKYDVEFNK
401: AAQSLTEAII PPTQKRTALN RLVKDNIALI VVLEAKFGNQ PVDSSGKRQL ICVANTHVNV QQELKDVKLW QVHTLLKGLE KIAASADIPM LVCGDFNTLP
501: GSAPHTLLVM GKVDPLHPDL LVDPLGILRP QTKLTHQLPL VSAYSSFVRP GTGLGLEQHR RRMDLNTNEP LFTNCTRDFI GTHDYIFYTA DTLMVESLLD
601: LLDEDGLRKD TALPSPEWSS NHIALLAEFR CMPRTRR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.