CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007403.1-P	Field mustard	cytosol	98.84	99.67
CDY49233	Canola	cytosol	98.67	99.0
CDY00572	Canola	cytosol	91.36	91.67
CDX67753	Canola	cytosol	91.03	91.33
CDX88992	Canola	mitochondrion	83.89	91.16
AT3G58580.1	Thale cress	cytosol	89.2	89.05
CDX98305	Canola	plastid	90.03	85.09
KRH71803	Soybean	cytosol	24.92	81.52
CDX98303	Canola	cytosol	75.58	76.86
CDX67751	Canola	cytosol	75.25	76.52
VIT_08s0007g07020.t01	Wine grape	cytosol	75.91	75.79
PGSC0003DMT400029795	Potato	cytosol	75.75	75.37
Solyc10g078950.1.1	Tomato	cytosol	69.44	74.51
KRH38033	Soybean	cytosol	73.92	74.17
KRG96349	Soybean	cytosol	73.42	73.67
KRH68083	Soybean	cytosol	72.76	72.76
TraesCS1A01G137900.1	Wheat	cytosol	71.43	71.07
TraesCS1B01G153300.2	Wheat	cytosol	71.43	71.07
TraesCS1D01G134400.1	Wheat	cytosol	71.43	71.07
GSMUA_Achr9P25420_001	Banana	cytosol	68.77	71.01
Os10t0412100-01	Rice	cytosol	71.26	70.91
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	69.93	70.88
HORVU1Hr1G035390.1	Barley	cytosol	71.1	70.74
GSMUA_Achr4P17200_001	Banana	cytosol	68.6	70.72
OQU91798	Sorghum	cytosol	71.1	70.63
KRH71804	Soybean	cytosol	44.85	70.5
Zm00001d032979_P003	Maize	cytosol	70.76	70.41
Os03t0166800-01	Rice	cytosol	70.76	70.18
Zm00001d014187_P011	Maize	cytosol	69.6	69.49
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	66.11	68.98
KXG40109	Sorghum	mitochondrion	69.77	67.74
Zm00001d027811_P001	Maize	mitochondrion	69.27	64.75
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	62.13	51.23
CDY12304	Canola	plastid	17.61	26.5
CDY12415	Canola	plastid	15.95	25.81
CDY27147	Canola	plastid	16.45	25.65
CDY24484	Canola	mitochondrion	18.6	24.89
CDX92241	Canola	mitochondrion, nucleus, plastid	18.6	24.89
CDX96494	Canola	plastid	18.11	24.72
CDY62302	Canola	mitochondrion, plastid	17.61	24.65
CDX73024	Canola	plastid	18.27	24.23
CDX97099	Canola	plastid	20.1	16.09
CDX69764	Canola	mitochondrion, plastid	19.77	15.74
CDX97100	Canola	plastid	0.17	0.14

Protein Annotations

EnsemblPlants:CDX71943	EnsemblPlantsGene:GSBRNA2T00155700001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:CDX71943
ProteinID:CDX71943.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0004EDEAA3	MapMan:16.8.2.1.2.1	:

Description

BnaC08g29310D

Coordinates

chrLK031795:+:1421063..1424346

Molecular Weight (calculated)

66768.6 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.253

Length

602 amino acids

Sequence
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KSAATEDVPE SSPLEGYFLR YRWFRVQSDK KVTICSVHPT EQATLQCVFC SKRPALVSKS YHCSPKCFTD
101: AWQHHKTLHE RAAAENGNSE EDNNNDLSRA NSAASGVLAS TLSASMSSLN GPPTPFYPSS IAQKNGGETL VEVGGCKTYT PTADDIGYVL KFECVVAVAE
201: SKQSVGHPST IMTSRVIPAP SPRPRRLIPV NGADVVGGHL DQDGRIQSAG SFTVLSYNIL SDTSASSELY SYCPTWALSW PYRRQNLLRE IVAYRADVVC
301: LQEVQSDHFH EIFAPELDKH GYQALYKRKT NEVLSGSTSA IDGCATFFRR DRFAHVKKYD VEFNKAAQSL TEAIIPPAQK RSALNRLVKD NIALIVVLEA
401: KFGNQPTDAS GKRQLICVAN THVNVQQELK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNTLPGSAPH SLLVYGKVDP QHPDLLVDPL GILRPQTKLT
501: HQLPLVSAYS SFVRSVMGIG LEQHRRKMDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSSHIAL LAEFRCMPRT
601: RR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.