CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07083
KXG26554
KXG38867
OQU82226

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	KXG38867	AT4G17950.1	21798944
AT3G58560.1	OQU82226	AT4G17950.1	21798944
AT3G58560.1	EES07083	AT4G24690.1	21798944
AT3G58560.1	KXG26554	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027811_P001	Maize	mitochondrion	96.94	93.32
Os03t0166800-01	Rice	cytosol	86.45	88.3
OQU91798	Sorghum	cytosol	82.42	84.32
KRH71803	Soybean	cytosol	23.55	79.35
VIT_08s0007g07020.t01	Wine grape	cytosol	74.52	76.62
GSMUA_Achr9P25420_001	Banana	cytosol	71.29	75.81
PGSC0003DMT400029795	Potato	cytosol	73.06	74.88
KRG96349	Soybean	cytosol	72.26	74.67
GSMUA_Achr4P17200_001	Banana	cytosol	70.16	74.49
KRH68083	Soybean	cytosol	72.1	74.25
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	68.39	73.48
Solyc10g078950.1.1	Tomato	cytosol	66.13	73.08
KRH38033	Soybean	cytosol	70.32	72.67
CDY00572	Canola	cytosol	69.84	72.17
CDX67753	Canola	cytosol	69.68	72.0
Bra014566.1-P	Field mustard	cytosol	69.52	71.83
AT3G58580.1	Thale cress	cytosol	69.84	71.81
AT3G58560.1	Thale cress	cytosol	69.52	71.59
Bra003344.1-P	Field mustard	cytosol	66.13	71.55
CDX88992	Canola	mitochondrion	63.87	71.48
CDX67751	Canola	cytosol	68.23	71.45
CDX98303	Canola	cytosol	67.74	70.95
Bra003342.1-P	Field mustard	cytosol	67.74	70.95
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	67.58	70.54
Bra007403.1-P	Field mustard	cytosol	67.42	70.02
CDX71943	Canola	cytosol	67.74	69.77
CDY49233	Canola	cytosol	67.26	69.5
KRH71804	Soybean	cytosol	42.9	69.45
CDX98305	Canola	plastid	69.52	67.66
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	65.65	55.75
EES19469	Sorghum	plastid	16.13	25.45
EER89572	Sorghum	plastid	17.26	22.86
EES03263	Sorghum	mitochondrion	18.55	13.19

Protein Annotations

EnsemblPlants:KXG40109	EnsemblPlantsGene:SORBI_3001G493200	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	MetaCyc:PWY-7799	MetaCyc:PWY-7800	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372
PFAM:PF15801	ProteinID:KXG40109	ProteinID:KXG40109.1	ProteinID:KXG40110.1	SEG:seg	SUPFAM:SSF56219
UniParc:UPI0001C80A67	UniProt:A0A1B6QQB7	MapMan:16.8.2.1.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:76223973..76231083

Molecular Weight (calculated)

68895.8 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.239

Length

620 amino acids

Sequence
(BLAST)

001: MTQVKPAPGG RMLTVLRVHL PSEIPIVGCE ITPYVLLRRP DGGVFTDDVS EAAPVDGYFM RYKWYRIQSD RRAAICSVHP TEQATLQCIG CLKSKIPVAK
101: SYHCSAKCFS DAWQHHRVLH ERAISALNEN GTEDDELFGR FGSGSSSSGI ISAALSGSTS NLSQSSGVNN GPTPVYPTGT EKSSGETWFE VGCSRTYTAT
201: ADDIGHVLRF ECIVVDVETQ GTVRAPTSVM TSRVIPAPTP TPRRLIPVNA ADAMGHFDLD SRTSSFGTFT VLSYNILADT YATSDTYSYC PTWALTWAYR
301: RQNLLREIIG YHADIICLQE VQSNHFEEFF SPELDKHGYQ ALYKKRTTEV YTGSPQAIDG CATFFRRDRF SHVKKYEVEF NKAAQSLTDA IIPAAQKKLA
401: LTRLVKDNIA LIAVLEAKFG NHGTENPSKR QLLCVANTHI NIHHDLKDVK LWQIHTLLKG LEKIAVSADI PMLVCGDFNS TPGSTSHWLL ARGKVDHLHP
501: DLAIDPLGIL RPLSKLTHQL PLVSAYSSFV SMAGVGYDLD HQRRRMDPAT NEPLFTNCTR DFTGTIDYIF YTADSLTVES LLELLDEDSL RKDTALPSPE
601: WSSDHIALLA EFRCKPRVRR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.