CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038091_P006	Maize	plastid	92.11	88.08
Os05t0389500-02	Rice	mitochondrion	80.41	81.23
TraesCS1D01G243100.1	Wheat	mitochondrion	77.61	77.02
TraesCS1B01G254600.1	Wheat	mitochondrion	76.84	76.26
TraesCS1A01G243100.1	Wheat	mitochondrion	76.84	76.26
GSMUA_AchrUn_...	Banana	cytosol	50.89	63.09
PGSC0003DMT400040652	Potato	cytosol, plastid	51.4	55.49
Bra023195.1-P	Field mustard	nucleus	50.64	54.82
KRH76418	Soybean	nucleus	40.2	54.48
VIT_02s0087g00390.t01	Wine grape	mitochondrion	53.94	53.94
Bra038426.1-P	Field mustard	plastid	51.91	53.12
KRH39729	Soybean	plastid	52.67	52.94
CDY27147	Canola	plastid	51.65	52.59
CDY12415	Canola	plastid	49.62	52.42
Solyc08g075010.2.1	Tomato	mitochondrion	51.4	51.93
CDY12304	Canola	plastid	52.42	51.5
AT1G31500.7	Thale cress	mitochondrion	52.42	48.82
CDY62302	Canola	mitochondrion, plastid	53.18	48.6
AT1G31530.1	Thale cress	cytosol	29.26	40.64
EER89572	Sorghum	plastid	24.17	20.3
OQU91798	Sorghum	cytosol	24.94	16.17
KXG40109	Sorghum	mitochondrion	25.45	16.13
EES03263	Sorghum	mitochondrion	22.14	9.98

Protein Annotations

EnsemblPlants:EES19469	EnsemblPlantsGene:SORBI_3009G124700	EntrezGene:8076845	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	PANTHER:PTHR12121	PANTHER:PTHR12121:SF42	PFAM:PF03372	ProteinID:EES19469	ProteinID:EES19469.1
RefSeq:XP_002441039.1	SEG:seg	SUPFAM:SSF56219	unigene:Sbi.8268	UniParc:UPI0001A892B8	UniProt:C5YXH3
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:47765581..47769743

Molecular Weight (calculated)

43788.7 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.442

Length

393 amino acids

Sequence
(BLAST)

001: MLKPQTSWAA SLPLFIVRRC SRSAASPSPA GDRRLSFLPV CKRRMSTLAQ PRFAPLPTER IESQTDAGAA GYQFRLVSYN ILAQVYIKST FFPHSPSACL
101: KWKSRSKAIL TELKSFDADL MCIQELDEYD TFYKKNMENS GYSSIYIQRS GDKRDGCGIF YKPKSAELVQ KEGIHYNDLV EKYVPSDHVN SAQENNSSTE
201: EDKNAKPDNS KRGDPNDPRV RLKRDCVGLL AAFKLSDPCD HILIVANTHI YWDPEWIDVK LAQAKYLLSR VSQFEQLISN KYNCKPSVII AGDFNSTPGD
301: KVYNYLVSAG GETPIKLSSL YAANGGEPEY TNYTPGFTGT LDYIFLSDGS SIKPTSLLCL PRGDSEDVKG GLPNFQHPSD HLPIGADFLV VNS

Best Arabidopsis Sequence Match ( AT1G31500.5 )
(BLAST)

001: MFSSTTLHHL PRPNLLLPRK VISRRMSTNP AIEPKVRKFE SVEGVDIGSR NKSDGIRFRL VSYNILAQVY VKSALLPHSP PACLKWKARS HAILSVLKNL
101: QADFFCLQEV DEYDSFYRNN MDSLGYSGIY IQRTGQRKRD GCAIFYKPSC AELVTKERIE YNDLVDSIKA DSVSCSEQKI ETSNEGKDSR KDSRDLNDPL
201: VRLKRDCVGI MAAFRINKPF QHIVIVANTH LYWDPELADV KLAQAKYLLS RLAQFKTLIS DEFECTPSLL LAGDFNSIPG DMVYSYLVSG NAKPTETIEE
301: EEAPVPLSSV YEVTRGEPKF TNCTPGFTNT LDYIFISPSD FIKPVSILQL PEPDSPDVVG FLPNHHHPSD HLPIGAEFEI RRE

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT1G31500]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.