CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045673_P003	Maize	plastid	86.97	91.87
TraesCS7A01G206900.2	Wheat	plastid	73.5	76.96
TraesCS7D01G209700.2	Wheat	plastid	73.08	76.51
Os06t0264900-00	Rice	plastid	50.0	76.47
TraesCS7B01G114200.1	Wheat	plastid	71.58	75.11
HORVU7Hr1G042150.3	Barley	nucleus, plastid	74.36	71.02
HORVU0Hr1G020140.2	Barley	mitochondrion, nucleus	68.59	69.78
GSMUA_Achr7P12580_001	Banana	mitochondrion	35.26	51.24
VIT_17s0000g04030.t01	Wine grape	plastid	43.8	46.49
KRH60320	Soybean	plastid	40.81	43.91
CDX92241	Canola	mitochondrion, nucleus, plastid	41.88	43.56
KRH41616	Soybean	cytosol	33.76	43.05
CDY24484	Canola	mitochondrion	40.81	42.44
Solyc03g119710.2.1	Tomato	plastid	39.1	42.17
AT3G18500.3	Thale cress	nucleus	39.96	41.65
Bra022326.1-P	Field mustard	mitochondrion, plastid	40.38	41.0
EES19469	Sorghum	plastid	20.3	24.17
EES03263	Sorghum	mitochondrion	35.04	18.81
KXG40109	Sorghum	mitochondrion	22.86	17.26
OQU91798	Sorghum	cytosol	22.22	17.16

Protein Annotations

EnsemblPlants:EER89572	EnsemblPlantsGene:SORBI_3010G109600	EntrezGene:8065770	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	PANTHER:PTHR12121	PANTHER:PTHR12121:SF48	PFAM:PF03372	ProteinID:EER89572	ProteinID:EER89572.1
RefSeq:XP_002438205.1	SEG:seg	SUPFAM:SSF56219	unigene:Sbi.6853	UniParc:UPI0001A89A14	UniProt:C5Z844
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:10900233..10904247

Molecular Weight (calculated)

52869.2 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.583

Length

468 amino acids

Sequence
(BLAST)

001: MSRRGAMSST AAPRARLSPP APASHPPPRK RGRSPSSAPG STASSWRASA ENAVPLDHHR RRWHNPERAP GRVWQRFRAP QLALPSSRLW VCSEDASTSP
101: SGDACTIMSY NILADYNAQN HPDLYLDVPW DALRWDSRRR LIIREIRHWD PDLVCLQEVD RFQDIATGMK SRGYEGIYQR RTGDTRDGCA MFWKSKRLHL
201: LEEDSIDFSE FNLRNNVAQI CVFELNGTHK FVLGNIHVLF NPKRGDIKLG QIRMLLEKAN ALAEKWDKIP IVLAGDFNST PDSAIYKFLS TMKLNISLHD
301: RRQLSGLDSS DFGLYELCSL LKYQWTDEEV RNATGCSNVV VAEHPLKLSS SYAMLKGNSD NRGLHGEPSA TSYHKKFLGT VDYLWHTRGI ECSRVLDTLP
401: IGVLRRTRGL PTREIGSDHL PIVAEFSFPE SVDDSGEEDE SEQDESEKEM SKAQHLFFSS DSSAEVAE

Best Arabidopsis Sequence Match ( AT3G18500.2 )
(BLAST)

001: MRCVNRVDCS WSRPSEAYRI LPSGGHLSSG FHQCPLSSLS FRSSFVCCSS STSGPSDSNP ESSSNRSYSR RWQNPLPRRQ HPDQIPSSQI ARDWIDSDTT
101: PVSQALERFT VVSYNILGDG NSSYHRELYS NVSVPYLKWG YRKRLICEEL IRLNPDIISM QEVDKYFDLF SMMEKAGYAG SYKRRTGDNV DGCAMFWKAD
201: RFGVLERENI EFSQFGMRDN VAQLAVLELR KSNKSRKILL GNIHVLYNPN QGDVKLGQVR SLCSKAHLLS KKWGDIPIVL CGDFNSTPKS PLYNFLASSE
301: LNVMEHDKKE LSGQKNCRPT KVLETGSKSS NTITFSFCSS WTKEEIRVAT GQENSYWAAH PLKLNSSYAS VKGSANTRDS VGEPLATSYH SKFLGTVDYL
401: WYSDGLLPAR VLDTLPIDVL CKTKGLPCQE LGSDHLALVS EFVFEPDG

Arabidopsis Description

DNAse I-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.