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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • cytosol 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92241 Canola mitochondrion, nucleus, plastid 81.96 81.78
CDY24484 Canola mitochondrion 79.96 79.78
Bra022326.1-P Field mustard mitochondrion, plastid 79.06 77.01
VIT_17s0000g04030.t01 Wine grape plastid 54.57 55.56
Solyc03g119710.2.1 Tomato plastid 53.01 54.84
KRH60320 Soybean plastid 50.33 51.95
KRH41616 Soybean cytosol 42.32 51.77
GSMUA_Achr7P12580_001 Banana mitochondrion 35.63 49.69
Zm00001d045673_P003 Maize plastid 40.98 41.53
TraesCS7A01G206900.2 Wheat plastid 40.76 40.94
TraesCS7B01G114200.1 Wheat plastid 40.31 40.58
TraesCS7D01G209700.2 Wheat plastid 40.09 40.27
EER89572 Sorghum plastid 41.65 39.96
HORVU0Hr1G020140.2 Barley mitochondrion, nucleus 39.64 38.7
AT1G73875.1 Thale cress nucleus 38.53 38.11
HORVU7Hr1G042150.3 Barley nucleus, plastid 40.76 37.35
Os06t0264900-00 Rice plastid 25.39 37.25
AT5G11350.4 Thale cress nucleus 39.42 23.44
AT1G31500.7 Thale cress mitochondrion 20.71 22.04
AT1G31530.1 Thale cress cytosol 13.81 21.91
AT3G58560.1 Thale cress cytosol 25.17 18.77
AT3G58580.1 Thale cress cytosol 25.17 18.74
Protein Annotations
Gene3D:3.60.10.10MapMan:35.1EntrezGene:821380ProteinID:AEE76107.1ArrayExpress:AT3G18500EnsemblPlantsGene:AT3G18500
RefSeq:AT3G18500TAIR:AT3G18500RefSeq:AT3G18500-TAIR-GEnsemblPlants:AT3G18500.3TAIR:AT3G18500.3InterPro:Endo/exonu/phosph_ase_sf
InterPro:Endo/exonuclease/phosphataseUniProt:F4J8R6InterPro:IPR036691RefSeq:NP_001189925.1PFAM:PF03372PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PANTHER:PTHR12121PANTHER:PTHR12121:SF48SUPFAM:SSF56219UniParc:UPI0001E92E85
SEG:seg:::::
Description
DNAse I-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J8R6]
Coordinates
chr3:+:6352472..6355446
Molecular Weight (calculated)
50480.6 Da
IEP (calculated)
8.351
GRAVY (calculated)
-0.473
Length
449 amino acids
Sequence
(BLAST)
001: MRCVNRVDCS WSRPSEAYRI LPSGGHLSSG FHQCPLSSLS FRSSFVCCSS STSGPSDSNP ESSSNRSYSR RWQNPLPRRQ HPDQIPSSQI ARDWIDSDTT
101: PVSQALERFT VVSYNILGDG NSSYHRELYS NVSVPYLKWG YRKRLICEEL IRLNPDIISM QEVDKYFDLF SMMEKAGYAG SYKRRTGDNV DGCAMFWKAD
201: RFGVLERENI EFSQFGMRDN VAQLAVLELR KSNKSRKILL GNIHVLYNPN QGDVKLGQVR SLCSKAHLLS KKWGDIPIVL CGDFNSTPKS PLYNFLASSE
301: LNVMEHDKKE LSGQKNCRPT KVLETGSKSS NTITFRSFCS SWTKEEIRVA TGQENSYWAA HPLKLNSSYA SVKGSANTRD SVGEPLATSY HSKFLGTVDY
401: LWYSDGLLPA RVLDTLPIDV LCKTKGLPCQ ELGSDHLALV SEFVFEPDG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.